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gtttttatgttttggctttgaattgtgtatcagagatgaactgtgaatacatgtaaaagtggctgtacagtgtatacatcagttgtatactaatttagctgtgatttatccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCTTCATGTTCCCCCTGGAAAAATGGGTCGTGTTATTGGAAGACGAGGAGC
species | Vitis vinifera |
transcript | Vv04s0008g00650.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCEST: gi|156737847|gb|EV241968.1|EV241968
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
EST: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCEST: gi|33409610|gb|CF215237.1|CF215237
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
EST: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCEST: gi|110722833|gb|EE099455.1|EE099455
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
EST: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCEST: gi|30129707|gb|CB915046.1|CB915046
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
EST: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCEST: gi|110388273|gb|EC953007.1|EC953007
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
EST: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCEST: gi|26267080|gb|CA818143.1|CA818143
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
EST: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCACTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCEST: gi|71883347|gb|DT032402.1|DT032402
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
EST: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCEST: gi|110365546|gb|EC928709.1|EC928709
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
EST: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCEST: gi|110416192|gb|EC982154.1|EC982154
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
EST: CCCTCCCATTCCAG ATAACCTGATTGT-GAAGGAAAATGCTCCAGAGGAAGAAATCCTCTCGTTTEST: gi|26265140|gb|CA816203.1|CA816203
genomic: CCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGG-AAATGCTCCAGAGGAAGAAATCCTCTCGGTT
EST: CATCAATGATAATGATTATGCTGAGTGGCCACCTCTCCCTCCCACTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCEST: gi|110385784|gb|EC950339.1|EC950339
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
EST: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCEST: gi|34542987|gb|CF511219.1|CF511219
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
EST: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAG ATAACTTGATTGTAGGATCAAATGCTCCAGAGGAEST: gi|110723073|gb|EE099967.1|EE099967
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGA
EST: CCACCTCTCCCTCCCATTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCEST: gi|33409202|gb|CF214829.1|CF214829
genomic: CCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
EST: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAEST: gi|110367167|gb|EC931093.1|EC931093
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGA
EST: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAG ATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
genomic: CATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGgtttttatgt ... atccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTC
ctgtacagtgtatacatcagttgtatactaatttagctgtgatttatccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCTTCATGTTCCCCCTGGAAAAATGGGTCGTGTTATTGGAAGACGAGGAGC
tactaat putative branch site (score: 1)
tttatcctt putative PPT
ttgtatactaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttatgttttggctttgaattgtgtatcagagatgaactgtgaatacatgtaaaagtggctgtacagtgtatacatcagttgtatactaatttagctgtgatttatccttatagATAACCTGATTGTAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCTTCATGTTCCCCCTGGAAAAATGGGTCGTGTTATTGGAAGACGAGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG