1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtgtatgtgtaattgactgctaaatctgattctagaacaatgtaattgatcattgttctttgtgctagctatactcaaatgatctaatctgatcatgcagGAAATTAGACGCCGTGGTCTCAAAGTTGCAGTTGCTGGAATCCCCAAAACAATTGATAATGACATTCCA
species | Vitis vinifera |
transcript | Vv04s0008g00520.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGGAACACAGAAAGGAGCATCTGTGATTTTTGAG GAAATTAGACGCCGTGGTCTCAAAGTTGCAGTTGCTGGAATCCCCAAAACAEST: gi|110713404|gb|EE089294.1|EE089294
genomic: ATGGAACACAGAAAGGAGCATCTGTGATTTTTGAGgtcattttgt ... gatcatgcagGAAATTAGACGCCGTGGTCTCAAAGTTGCAGTTGCTGGAATCCCCAAAACA
EST: ATATAATTGGAGGTGATGGAACACAGAAAGGAGCATCTGTGATTTTTGAG GAAATTAGACGCCGTGGTCTCAAAGTTGCAGTTGCTGGAATCCCCAAAACAEST: gi|110718348|gb|EE095077.1|EE095077
genomic: ATATAATTGGAGGTGATGGAACACAGAAAGGAGCATCTGTGATTTTTGAGgtcattttgt ... gatcatgcagGAAATTAGACGCCGTGGTCTCAAAGTTGCAGTTGCTGGAATCCCCAAAACA
EST: TATAATTGGGAGGTGATGGAACACAGAAAAGAGCATCTGTGATTTTTGAG GAAATTANACGCCGTGGTCTCAAA
genomic: TATAATTGG-AGGTGATGGAACACAGAAAGGAGCATCTGTGATTTTTGAGgtcattttgt ... gatcatgcagGAAATTAGACGCCGTGGTCTCAAA
ttgatcattgttctttgtgctagctatactcaaatgatctaatctgatcatgcagGAAATTAGACGCCGTGGTCTCAAAGTTGCAGTTGCTGGAATCCCCAAAACAATTGATAATGACATTCCA
aaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtatgtgtaattgactgctaaatctgattctagaacaatgtaattgatcattgttctttgtgctagctatactcaaatgatctaatctgatcatgcagGAAATTAGACGCCGTGGTCTCAAAGTTGCAGTTGCTGGAATCCCCAAAACAATTGATAATGACATTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- gtatgtg
- - - - - - -tgactgc
- - - - - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - -agaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctag