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...ttttatttttattcttatttttttggtcttgaaattttcatggcctcaaacatcatggtcatagattatactttacatccaagcatctttttgcttgcagCTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACTCCCAAGATGGACAGAGCTTCTCCGCTTGTTTG
species | Vitis vinifera |
transcript | Vv03s0091g00740.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTGGTTGATGGTGTGAAGTTTAAGGGAGATGGTTACAGTTCCTGTGAAG CTAGTGGGCCTGGAAGGTGCAAGATAAACAATGGCGGTTGTTGGCATGACTEST: gi|110363399|gb|EC926982.1|EC926982
genomic: CTTGGTTGATGGTGTGAAGTTTAAGGGAGATGGTTACAGTTCCTGTGAAGgtaaagttca ... ttgcttgcagCTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACT
EST: TTAAGGGAGATGGTTACAGTTCCTGTGAAG CTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACTEST: gi|110359067|gb|EC919937.1|EC919937
genomic: TTAAGGGAGATGGTTACAGTTCCTGTGAAGgtaaagttca ... ttgcttgcagCTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACT
EST: CTTGGTTGATGGTGTGAAGTTTAAGGGAGATGGTTACAGTTCCTGTGAAG CTAGTGGGCCTGGAAGGTGCAAGATAAACAATGGCGGTTGTTGGCATGACTEST: gi|110718216|gb|EE094793.1|EE094793
genomic: CTTGGTTGATGGTGTGAAGTTTAAGGGAGATGGTTACAGTTCCTGTGAAGgtaaagttca ... ttgcttgcagCTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACT
EST: CTTGGTTGATGGTGTGAAGTTTAAGGGTGATGGTTACAGTTCCTGTGAAG CTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACTEST: gi|349830520|gb|FQ416830.1|FQ416830
genomic: CTTGGTTGATGGTGTGAAGTTTAAGGGAGATGGTTACAGTTCCTGTGAAGgtaaagttca ... ttgcttgcagCTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACT
EST: CTTGGTTGATGGTGTGAAGTTTAAGGGAGATGGTTACAGTTCCTGTGAAG CTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACTEST: gi|26262131|gb|CA813194.1|CA813194
genomic: CTTGGTTGATGGTGTGAAGTTTAAGGGAGATGGTTACAGTTCCTGTGAAGgtaaagttca ... ttgcttgcagCTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACT
EST: ATGGTGTGAAG-TTAAGGGAGATGGTTACAGTTCCTGTGAAG CTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACTEST: gi|30296719|gb|CB973513.1|CB973513
genomic: ATGGTGTGAAGTTTAAGGGAGATGGTTACAGTTCCTGTGAAGgtaaagttca ... ttgcttgcagCTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACT
EST: GTTT-AGGGAGATGGTTACAGTTCCTGTGAAG CTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACT
genomic: GTTTAAGGGAGATGGTTACAGTTCCTGTGAAGgtaaagttca ... ttgcttgcagCTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACT
tcaaacatcatggtcatagattatactttacatccaagcatctttttgcttgcagCTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACTCCCAAGATGGACAGAGCTTCTCCGCTTGTTTG
tctttttgctt CT-rich tract
atagattatacttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttatttttattcttatttttttggtcttgaaattttcatggcctcaaacatcatggtcatagattatactttacatccaagcatctttttgcttgcagCTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACTCCCAAGATGGACAGAGCTTCTCCGCTTGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - -tttcatg
- - - - - - - - - - - - - - - - - - - - - gcctcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -catggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatcca