Sequence
atgc intronic sequence ATGC exonic sequence...aatcagactgccatttggggctgaattccagtggcagcttttgatgttctgtttttgtaggattctttcttatctttcaatgtgctgagctttattgcagACATCTATGCATGGAAGCTGTCCAGTGATTGAAGGGGAGAAGTGGGTGGCTACAAAGTGGATCAGAGATGAACAACAAGAAGACTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0091g00540.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G26800.1 (Glycine max), 3'ss of exon 6
--------------------------------------------------------------------------------------aat-cagactgccatttggggctgaattccagtggcagctt---ttgatgttct-gtttttgtaggattctttcttatctttcaatgtgctgagctttattgcagACATCTATGCATGGAAGCTGTCCAGTGATTGAAGGGGAGAAGTGGGTGGCTACAAAGTGGATCAGAGATGAACAACAAGAAGACTAA------------
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gtaatctttcagtttcaaatatatttgccattccttttacggtgaacatggatagagaaattttcagttaagctaaagggaaataaaatgcatgcaaaaacttagaaaaatgtaacattcagaacttggttcaaagtgatcatttttggaacaagtcattttgtttgtcaccccacttaatatttctgcagACTTCTCTTCATGGAAGTTGTCCAGTGATTAAGGGGGAGAAATGGGTCGCAACGAAGTGGATTGATGATAGAGAGCAACACCACTTGCTTTCTTTATAA
upper sequence: Vv03s0091g00540.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G40520.1 (Glycine max), 3'ss of exon 7
aatcagactgccatttggggctgaattcca-gtggcagcttttg--atgttctgtttt-tgtaggattctttcttatctttcaatgtgctgagctttattgcagACATCTATGCATGGAAGCTGTCCAGTGATTGAAGGGGAGAAGTGGGTGGCTACAAAGTGGATCAGAGATGAACAACAAGAAGACTAA-------------
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----atgtaacctttcagaacttcttgcaaagtggtaatttttggaacaagccattttgtttgtcactccactttcgttttttttttttttaatatttctgcagACTTCTCTTCATGGAAGTTGTCCAGTGATTAAGGGGGAGAAATGGGTCGCAACGAAGTGGATTGATGATAGAGAGCAACACTACTAGTTTTCTTTCTAAA
upper sequence: Vv03s0091g00540.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ15913 (Selaginella moellendorffii), 3'ss of exon 7
aatcagactgccatttggggctgaattccagtggcagcttttgatgttctgtttttgtaggattctttcttatctttcaatgtgctgagctttattgcagACATCTATGCATGGAAGCTGTCCAGTGATTGAAGGGGAGAAGTGGGTGGCTACAAAGTGGATCAGAGATGAACAACAAGAAGACTAA
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----------------------------------------------gtcagtcgatcgaaaacgaagaaatcgccactgacatattgtcgccgttgttagACTGCATTGCACGGGAGCTGTCCAGTGATTAAAGGCGAGAAATGGGTCGCCACAAAGTGGATCAGGGACAAAGAAGATTGGTCTTGA
upper sequence: Vv03s0091g00540.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ33274 (Selaginella moellendorffii), 3'ss of exon 6
aatcagactgccatttggggctgaattccagtggcagcttttgatgttctgtttttgtaggattctttcttatctttcaatgtgctgagctttattgcagACATCTATGCATGGAAGCTGTCCAGTGATTGAAGGGGAGAAGTGGGTGGCTACAAAGTGGATCAGAGATGAACAACAAGAAGACTAA
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----------------------------------------------gtcagtcgatcgaaaacgaagaaatcgccactgatatattgtcgccgttgttagACTGCATTGCACGGGAGCTGTCCAGTGATTAAAGGCGAGAAATGGGTCGCCACGAAGTGGATCAGGGACAAAGAAGATTGGTCTTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttctgtttttgtaggattctttcttatctttcaatgtgctgagctttattgcagACATCTATGCATGGAAGCTGTCCAGTGATTGAAGGGGAGAAGTGGGTGGCTACAAAGTGGATCAGAGATGAACAACAAGAAGACTAA
ctttatt CT-rich tract
tttttgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatcagactgccatttggggctgaattccagtggcagcttttgatgttctgtttttgtaggattctttcttatctttcaatgtgctgagctttattgcagACATCTATGCATGGAAGCTGTCCAGTGATTGAAGGGGAGAAGTGGGTGGCTACAAAGTGGATCAGAGATGAACAACAAGAAGACTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - actgcca
- - - - - - - - -gggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctga