Sequence
atgc intronic sequence ATGC exonic sequencegtgcatatctttttctggaacatagtctgtgcagcatgggtgattattttgtgtcaccacattcaataaatgtgtgcagGTTATTCGAGAATCGGGCACTAACACACAAACGGGTGACCGCCCATTTTATGATTTTCTTGAGGGTTGTCTGCGTCACAAGGCAGAGATGGTGATTTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G04820.1 (Glycine max), 3'ss of exon 7
gtgcatatctttttctggaacatagtctgtgcagcatgggtgattattt-tgtg-tcaccacattcaataaatgtgtgcagGTTATTCGAGAATCGGGCACTAACACACAAACGGGTGACCGCCCATTTTATGATTTTCTTGAGGGTTGTCTGCGTCACAAGGCAGAGATGGTGATTTTTG
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gtgtgtttcccttttcataa-atagctctcactgaagtgatatttatttgcgtaatctttagatagcataa-tatctgcagGTAATTCGGGAGTCAGGAAATAATACACAATCAGGGGACCGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGTCACAAGTCAGAGATGGTGATTTTTG
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G12610.2 (Glycine max), 3'ss of exon 7
gtgcatatctttttctggaacatagtctgtgcagcatgggtgattattt-tgtg-tcaccacattcaataaatgtgtgcagGTTATTCGAGAATCGGGCACTAACACACAAACGGGTGACCGCCCATTTTATGATTTTCTTGAGGGTTGTCTGCGTCACAAGGCAGAGATGGTGATTTTTG
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gtgtgttttccttttcttaa-gtagctctcactgaaacagtatttgtttgcgtaatctttagatagcataa-tatctgcagGTAATTCGGGAGTCAGGAAATAATACACAATCAGGGGACCGTCCCTTCTATGATTATCTTGAGAGTTGCCTTCGTCACAAGTCAGAGATGGTGATTTTTG
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G01520.1 (Glycine max), 3'ss of exon 7
gtgcatatctttttctg-gaacatagtctgtgcagcatgggtgattattttgtgtcaccacattcaataaatgtgtgcagGTTATTCGAGAATCGGGCACTAACACACAAACGGGTGACCGCCCATTTTATGATTTTCTTGAGGGTTGTCTGCGTCACAAGGCAGAGATGGTGATTTTTG---
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gtgtgtttcctttcttgtgtactttattcgtggaatgatatttattttcttaatctgtatcgtccatcatatatgt--agGTTATTCATGAATCAGGCA---ATACACAGTCAGGGGAACGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGCCACAAGTCAGACATGGTGATTTTTGAAG
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G01470.1 (Glycine max), 3'ss of exon 7
gtgcatatctttttctg-gaacatagtctgtgcagcatgggtgattattttgtgtcaccacattcaataaatgtgtgcagGTTATTCGAGAATCGGGCACTAACACACAAACGGGTGACCGCCCATTTTATGATTTTCTTGAGGGTTGTCTGCGTCACAAGGCAGAGATGGTGATTTTTG---
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gtgtgtttcctttcatgtgtgctttattactggaatgatatttattttctta-atctgtatcttccatca-tatatgtagGTTATTCATGAATCAGGCC---ATACACAGTCAGGGGAACGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGCCACAAGTCAGACATGGTGATTTTTGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110359101|gb|EC920028.1|EC920028EST: ATGTTCGCTCACCATTGGCTCAATGCCTCTTGATCCGTTATACCAGCCAG GTTATTCGAGAATCGGGCACTAACACACAAACGGGTGACCGCCCATTTTAT
genomic: ATGTTCGCTCACCATTGGCTCAATGCCTCTTGATCCGTTATACCAGCCAGgtgcatatct ... atgtgtgcagGTTATTCGAGAATCGGGCACTAACACACAAACGGGTGACCGCCCATTTTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtctgtgcagcatgggtgattattttgtgtcaccacattcaataaatgtgtgcagGTTATTCGAGAATCGGGCACTAACACACAAACGGGTGACCGCCCATTTTATGATTTTCTTGAGGGTTGTCTGCGTCACAAGGCAGAGATGGTGATTTTTG
attcaataaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcatatctttttctggaacatagtctgtgcagcatgggtgattattttgtgtcaccacattcaataaatgtgtgcagGTTATTCGAGAATCGGGCACTAACACACAAACGGGTGACCGCCCATTTTATGATTTTCTTGAGGGTTGTCTGCGTCACAAGGCAGAGATGGTGATTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG