Sequence
atgc intronic sequence ATGC exonic sequence...aaggttgtaaaaatgtcattttgaacagataagagatatgggatgcgttttataatgatgccatgttatttatttattttttattttttgtttgtttcagGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGTTCTATCTGATTTCTTTGTATCAGTTGGCTTGTCAGAAAACCTCTCAGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G365185_T01 (Zea mays), 3'ss of exon 7
--aaggttgtaaaa-atgtcat-tttgaacagataagagatatgggatgcgttttataatgatgccatgttatttatttattttttattttttgtttgtttcagGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGTTCTATCTGATTTCTTTGTATCAGTTGGCTTGTCAGAAAACCTCTCAGTT
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gtaagcttataatctatgacctatgtcaagctacatgaaattatgaatatgtttgtagacaatattttccaaaacgacctaattcgaagtttcattg--cacagGCATTACAATATGAACCGCATTCGTTTGGTTTGGTCCCGTATTTGGAAAGTTCTGTCAGATTTTTTTGTTTCTGTTGGGTTGTCAGAGAACCTTTCAGTT
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G48200.1 (Glycine max), 3'ss of exon 7
-aaggttgtaaaaatgtcattttgaacagataagagatatgggatgcgttttataatgatgccatgttatttatttattttttattttttgtt-tgttt-cagGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGTTCTATCTGATTTCTTTGTATCAGTTGGCTTGTCAGAAAACCTCTCAGTT
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aatcggtgattccaagttattctcttctcttgc-acatttatgattaaaattctaatgat--cattcaatctacttaagactagaacatggttgcatttgcagGCATTATAATATGAACCGCATCAGATTAGTATGGTCTCGCATATGGAATGTTCTCTCAGATTTCTTTGTGTCAGTTGGATTGTCAGAAAACTTGTCAGTT
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G00230.1 (Glycine max), 3'ss of exon 8
-aaggttgtaaaaatgtcattttgaacagataagagatatgggatgcgttttataatgatgccatgttatttatttattttttattttttgtt-tgttt-cagGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGTTCTATCTGATTTCTTTGTATCAGTTGGCTTGTCAGAAAACCTCTCAGTT
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aattggtgattccaagttattctcttctcatgc-acatttatgattaaaattctaatgat--cattcaatctacttaagactagaacatggttgcatttgcagGCATTATAATATGAACCGCATCAGATTAGTATGGTCTCGCATATGGAATGTTCTCTCAGATTTCTTTGTGTCGGTTGGATTGTCAGAAAACTTGTCAGTT
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G35380.1 (Arabidopsis thaliana), 3'ss of exon 6
aaggttgtaaaaatgtcatttt--gaacagataagagatatgggatgcgttttataatgatgccatgttatttatttattttttattttttgtttgtttcagGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGTTCTATCTGATTTCTTTGTATCAGTTGGCTTGTCAGAAAACCTCTCAGTT
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------gtaact-tctcattctatgatcttatactaattttacattgctctgctttgccattctctg--atcaaatgaactgtt-ttctttctctgtgacagGCATTATAACATGAACCGGATCCGATTAGTTTGGTCCCGCATATGGAATGTTCTTTCTGATTTCTTCGTATCAGTTGGCTTGTCAGAGAATCTCTCTGTT
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G38200.1 (Arabidopsis thaliana), 3'ss of exon 7
------------------------------------------------------aaggttgtaaaaatgtcattttgaacagataag-agatatgggatgcgttttataatgatgccat--gttatttatttattttttat-----tttttgtttgtt--tcagGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGTTCTATCTGATTTCTTTGTATCAGTTGGCTTGTCAGAAAACCTCTCAGTT
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gtaagaatttcttcttttgatactctctttagaacacatagaatgagaaatggacatattgaatacatctcatcttggctacagaactggatatcgagtgagcatcatgatagtctaataagatgtcaacatatcatttacatatctcttttcttgctgtacagCCACTACAACATGAACCGCATCAGGCTAGTCTGGTCTCGCATATGGAGCATCCTGTCAGATTTTTTTGTATCTGTTGGCTTGTCAGAGAATCTTTCTGTT
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ15473 (Selaginella moellendorffii), 3'ss of exon 7
aaggttgtaaaaatgtcattttgaacagataagagatatgggatgcgttttataatgatgccatgttatttatttattttttattttttgtttgtttcagGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGTTCTATCTGATTTCTTTGTATCAGTTGGCTTGTCAGAAAACCTCTCAGTT
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------------------------------------------gtaagtaatctgtggcttctttctggtct--caattttctaaattacgctttttgcagGCATTTCAACATGAACCGCATCAGACTCGTTTGGTCGCGAATCTGGAACGTTCTCTCCGACTACTTCGTCACGGTTGGGTGTTCTGACAACTTGTCCATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713726|gb|FC063751.1|FC063751EST: TCTCCTACAGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGC GCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGT
genomic: TCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCgtaagcttat ... tttgtttcagGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgttttataatgatgccatgttatttatttattttttattttttgtttgtttcagGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGTTCTATCTGATTTCTTTGTATCAGTTGGCTTGTCAGAAAACCTCTCAGTT
ttttttattttttgtt CT-rich tract
tataatgatgccatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaggttgtaaaaatgtcattttgaacagataagagatatgggatgcgttttataatgatgccatgttatttatttattttttattttttgtttgtttcagGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGTTCTATCTGATTTCTTTGTATCAGTTGGCTTGTCAGAAAACCTCTCAGTT
- - - gtaaaaa
- - - - - - - - - - - gaacaga
- - - - - - - - - - - - - - -taagaga
- - - - - - - - - - - - - - - - - - - - ggatgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgtt