Sequence
atgc intronic sequence ATGC exonic sequence...tgaactccttatcttatgcctatacgctgcaaaatttattggtaatgtcatcttcatacaaaactaaagtttaacaggttcatgtattcatccagcacagATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTATGAGCTAATGGGAGACCGGTTATCTGGAAGTGTTTCGGTTCTTGGAGACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os04g47530.1 (Oryza sativa), 3'ss of exon 5
------------------------tgaactccttatcttatgcctatacgctgcaaa-atttattggtaatgtcatcttcatacaaaactaaagtttaacaggttcatgtattcatccagcacagATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTATGAGCTAATGGGAGACCGGTTATCTGGAAGTGTTTCGGTTCTTGGAGACT
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gtacttgtctttccaagaaccatacgagttatcaatgttttgtcctaataaagaagctgcttttccttgatgtttttgtgatattgtg--gatatctgatagcatcgt-tctcccgccaacacagATGGGCATTGCTTCCATTGTTCACCTCTATGTGTTCCCTGCGAAGCCCTATGAGCTGCAAGCCAACCAGTCACCAGGAAACGTCTCAGTACTCGGGGATT
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os06g51100.2 (Oryza sativa), 3'ss of exon 8
------------------------tgaactccttatcttatgcctatacgct--gcaaaatttattggtaatgtcatcttcatacaaaactaaagtttaacaggttcatgtattcatccagcacagATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTATGAGCTAATGGGAGACCGGTTATCTGGAAGTGTTTCGGTTCTTGGAGACT
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gttgtcgattcctattttaccgtgacagtgaaggatttcctgtttattcatttagtcatgcttgtgtcttttttgttgtccatttgaaac-aaaccctaactagttgttttgt-catccaatacagATGGGAGTTGCTTCTATTGCCCACCTGTATGTGTTCCCTGCCAAGCCATATGAGATGATGGGTGATCGTTTCATTGGAGGGGTTTCAGTTCTCGGAGACT
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G082181_T01 (Zea mays), 3'ss of exon 7
-----------------------tgaactccttatcttatgcctatac----gctgcaaaatt-tattggtaatgtcatcttcatacaaaactaaagtttaacaggttcatgtattcatccagcacagATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTATGAGCTAATGGGAGACCGGTTATCTGGAAGTGTTTCGGTTCTTGGAGACT
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gtattcatccttccagggtgtttttaactttttattctctatctttgcctttgcttaaaaatcatttcattcatgttatgtggcta-gttatagatacctgatagcaccatggcttcctccaggacagATGGGCATTGCTTCAGTTGTTCACCTCTATGTGTTCCCAGCCAAGCCCTATGCACTCTTAACTAATCAGTCACACGGAAACATTTCTGTACTTGGGGACT
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G082181_T02 (Zea mays), 3'ss of exon 7
-----------------------tgaactccttatcttatgcctatac----gctgcaaaatt-tattggtaatgtcatcttcatacaaaactaaagtttaacaggttcatgtattcatccagcacagATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTATGAGCTAATGGGAGACCGGTTATCTGGAAGTGTTTCGGTTCTTGGAGACT
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gtattcatccttccagggtgtttttaactttttattctctatctttgcctttgcttaaaaatcatttcattcatgttatgtggcta-gttatagatacctgatagcaccatggcttcctccagGACAGATGGGCATTGCTTCAGTTGTTCACCTCTATGTGTTCCCAGCCAAGCCCTATGCACTCTTAACTAATCAGTCACACGGAAACATTTCTGTACTTGG-----
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G00250.1 (Glycine max), 3'ss of exon 5
tgaactccttatcttatgcctatacgctgcaaaatttattggtaatgtcatcttcatacaaaactaaagtttaacaggttcatgtattcatccagcacagATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTATGAGCTAATGGGAGACCGGTTATCTGGAAGTGTTTCGGTTCTTGGAGACT
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cacgttcagcacttcttattttcatgttttacatttttatgactgcttcagataaggggaagaataaagtttaacagcaatttgtattcatcaagcacagATGGGCATTGCTTCCATAGTTCACCTGTATGTGTTTCCAGCAAAGCCTTATGAGCGAATGGGAGACCGCTTTTCTGGAAGCGTTTCAGTTCTTGGAGATT
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G00300.1 (Glycine max), 3'ss of exon 5
tgaactccttatcttatgcctatacgctgcaaaatttattggtaatgtcatcttcatacaaaactaaagtttaacaggttcatgtattcatccagcacagATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTATGAGCTAATGGGAGACCGGTTATCTGGAAGTGTTTCGGTTCTTGGAGACT
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catgttcagcacttcttattttcatgttttacatttttatgactgcttcagataaggggaagaataaagtttaacagcaatttgtattcatcaagcacagATGGGCATTGCTTCCATAGTTCACCTGTATGTGTTTCCAGCAAAGCCTTATGAGCGAATGGGAGACCGCTTTTCTGGAAGTGTTTCAGTTCTCGGAGATT
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G38360.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------------------------------------tgaactccttatcttatgcctatacgctgcaa--aatttattgg------taatgtcatcttcataca-aaactaaagtttaacaggttcatgtattcatccagcacagATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTATGAGCTAATGGGAGACCGGTTATCTGGAAGTGTTTCGGTTCTTGGAGACT
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gtaaatgtcttctgttgttaccaattcctgcaaaaggttaaacattatgtgtgatctttgtttacgagtgcaaaactttttcttcattgcttcctattaacaagcagtctatggagtcgtctgttttcctttctttaaataaattaaagctcttaacact--tgtgctggtccagTGCAGATGGGTATTGCTTCCGTTGTTCACCTGTATGTATTCCCAGCAAAGCCTTATGGTCTAATGGGAGACCGCTTTACTGGATCCGTTTCAGTTCTTGG-----
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G38360.2 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------------------------------------tgaactccttatcttatgcctatacgctgcaa--aatttattgg------taatgtcatcttcataca-aaactaaagtttaacaggttcatgtattcatccagcacagATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTATGAGCTAATGGGAGACCGGTTATCTGGAAGTGTTTCGGTTCTTGGAGACT
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gtaaatgtcttctgttgttaccaattcctgcaaaaggttaaacattatgtgtgatctttgtttacgagtgcaaaactttttcttcattgcttcctattaacaagcagtctatggagtcgtctgttttcctttctttaaataaattaaagctcttaacact--tgtgctggtccagtgcagATGGGTATTGCTTCCGTTGTTCACCTGTATGTATTCCCAGCAAAGCCTTATGGTCTAATGGGAGACCGCTTTACTGGATCCGTTTCAGTTCTTGGTGACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716138|gb|FC068057.1|FC068057EST: AAGGCTTACAGTCGAAATCCAGTGTCCAAGACTTCATCATTTGTATGGAG ATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTAT
genomic: AAGGCTTACAGTCGAAATCCAGTGTCCAAGACTTCATCATTTGTATAGAGgtagtttttc ... tccagcacagATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtcatcttcatacaaaactaaagtttaacaggttcatgtattcatccagcacagATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTATGAGCTAATGGGAGACCGGTTATCTGGAAGTGTTTCGGTTCTTGGAGACT
ttcatcc CT-rich tract
aaaactaaagtttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaactccttatcttatgcctatacgctgcaaaatttattggtaatgtcatcttcatacaaaactaaagtttaacaggttcatgtattcatccagcacagATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTATGAGCTAATGGGAGACCGGTTATCTGGAAGTGTTTCGGTTCTTGGAGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - tatgcct
- - - - - - - - - - - - - ctgcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgta