Sequence
atgc intronic sequence ATGC exonic sequence...aagtttcttcttgagttgtgatgctagcaactctataactttttgctttttgagtgattctttttggtattttatttctaatcatacttatgatgggcagGTCTGCATATTGTGATGCACAGTTACCACTTGAGAACTTGAGAGAATTCTTGCCACGTCTAATTCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G42960.1 (Glycine max), 3'ss of exon 7
aagtttcttcttgagttgtgatgctagcaactctat---aactttttgctttttgagtgatt-ctttttggtat-tttatttctaatcatacttatgatgggcagGTCTGCATATTGTGATGCACAGTTACCACTTGAGAACTTGAGAGAATTCTTGCCACGTCTAATTCCA
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---ttgttaactgtatt-taaagttttaaactgtacttaaactttgtcttttttatatcctagctatttagcatctttctcttttttaataatttctattg-cagGTCTGCTTATTGTGATGCTCAACTGCCACCTGAAAACTTAAGAGAATTCTTGCCCCGTCTTATTCCA
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G24040.1 (Glycine max), 3'ss of exon 7
aagtttcttcttgagt---tgtgatgctagca--actctataactttttgctttttgagtgatt-ctttttggtat-tttatttctaatcatacttatgatgggcagGTCTGCATATTGTGATGCACAGTTACCACTTGAGAACTTGAGAGAATTCTTGCCACGTCTAATTCCA
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------cttgttaagtgtatttaaagtttatactgtacttaaactttgtctttcttatatcctggctatttagcatctttctcttttttaataatttctattg-cagGTCTGCTTATTGTGATGCTCAACTGCCACCTGAAAACTTAAGAGAATTCTTGCCCCGTCTTATTCCA
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G16950.2 (Arabidopsis thaliana), 3'ss of exon 7
---------aagtttcttcttgagttgtgatgctagcaactctata---actttttgctttttgagtgattctttttggtattttatttct----aatcatacttatgatgggcagGTCTGCATATTGTGATGCACAGTTACCACTTGAGAACTTGAGAGAATTCTTGCCACGTCTAATTCCA
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gtaaaatgctattctctttattttctctatagatgacttttttatacctgttttttctcttatgttttatccttgtcctcatttgataacataaaagttatattgttgtttggcagGTCTGCATACTGTGATGCTCAGCTACCTCCAGAGAACTTGAAAGAGTTTCTGCCACGCCTAATTCCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttttgagtgattctttttggtattttatttctaatcatacttatgatgggcagGTCTGCATATTGTGATGCACAGTTACCACTTGAGAACTTGAGAGAATTCTTGCCACGTCTAATTCCA
ttctaat putative branch site (score: 2)
tattttatttctaatc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagtttcttcttgagttgtgatgctagcaactctataactttttgctttttgagtgattctttttggtattttatttctaatcatacttatgatgggcagGTCTGCATATTGTGATGCACAGTTACCACTTGAGAACTTGAGAGAATTCTTGCCACGTCTAATTCCA
- - - cttcttg
- - - - - - - - - - - gctagca