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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagatatcatttttctacttttaacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA

Basic information

species Vitis vinifera
transcript Vv03s0038g02760.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 7
----gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagatatcatttttctacttttaacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA
     ||| |  |   | |||||  |  |  || ||||   |     | ||||  ||    |||| |  ||      |||    |   |||||||||  | |||| ||  ||||| ||||||||||| || || ||||| ||||||||||| || ||||| || || || || || ||||||||||| || || || || ||||
atggtatgctgtagagcaatttacctgttcatttttttccatggagacatttttgcatcgctgaa-tcactgct---tatttgctgattacttttaatctccagGGTGGTGAAGATGACAACTTTGCTATCGTGTTTGCTGCTATGGGAGTGAATATGGAAACAGCCCAATTCTTCAAACGTGATTTTGAAGAGAACGGGTCAA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 7
-gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagatatcatttttctacttttaacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA
   ||| |  | | |||| || |      |  | ||||    |    |||| ||  | | ||  ||   | |    |  || |  |  || |||| |||||| ||  ||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| || || || || || ||||||||||| || || ||||| || |
tactgtaaggtcaacattcatatggagcattgtgtattaatgtatgcttta-catgtctaaatatggcttaatcactgcttctgatttttgtaacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
--gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagatatcatttttctacttttaacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA
    ||| |  | | ||||||| |      |  | ||||    |    ||||    | || |    |||   ||  |    || |    || | || |||||| ||  ||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| || || || || || ||||||||||| || || || || || |
ttcctgtgaggtcaacatttatatggaggattgtgtattcatgtatgctttacatgtcttaataaggctt--agtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 7
gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagatatcatttttctacttt--taacttgcagGATGTGG---AAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA
    ||||    ||  || | | ||| ||  ||||||     |  ||   | |   |   |      | | | | |     |   | |||   ||  | |||| ||  |   |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||  
---attaataagcctattttcttcttattcatttattggaacttgttactttacactaagatgaagaaagtggtttttccatctaattttgtcaatatacaggGTGGAGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGCTC--

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G42940.2 (Glycine max), 3'ss of exon 7
gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagatatcatttttctacttttaacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA
  | | |  ||||   ||| |  | |||  ||  ||| | |   | | ||    || | |  |     |||  | |||    |    | |||   |||||| ||  ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||
-gtat-agctgactgcttaat--catttacttaaattctttacttctgtactttttgtaagatgaaagtgatttttcaaaaataccatgtta---tgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGATCAA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 8
gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagat---atcatttttctacttttaacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA
  | ||   |    ||||||||    || ||  | |  |    || | ||    || || ||||  | | ||||   |  | ||||  ||   ||   || ||| ||  ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||| || ||||| ||||||||||
cttatttccttcagatttatttttgcttaatcgtttacttaaactctctac---ttctgtacttcttgtaagatgaaagtaatttttcacaaatactatgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAGCGTGACTTTGAGGAGAATGGATCAA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G38110.2 (Glycine max), 3'ss of exon 7
gatgttaaatgaccatttatttcctttttatttt----attttctttctttttatcaattttgaacttgctatgagatatcatttttctacttttaacttgcagGATGTG---GAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA
 |  | | | | | ||||  ||| | || ||||     |  ||  | ||||  | |||  |  |    |   |||  | ||| |       | | ||  | |||| ||     ||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||| ||||| |   
-aattaataaggctattttcttcttattcatttattggaacttgctactttacaccaagatgaagaaag---tgatttttcaatcgaactttgtcaatatacagGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCT---

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 8
-gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagatatcatttttctacttttaacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA
     || | |    |   || | |  |   ||     || | |  |   || |  | | |     |  |   | ||   |    |  | | || |||||| ||  ||| || || ||||| |||||||| || ||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
ctcctttgatttggtaaa-atctacaatgagttggtagttgtgtaatgccataatgtattataaaacagtatcacattggtccatttatgtgaatttgcagCATCAGGAGGATGATAACTTCGCCATTGTGTTCGCAGCAATGGGTGTGAACATGGAGACTGCACAATTTTTTAAACGTGATTTCGAGGAGAATGGATCGA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 3'ss of exon 7
gatgttaaatgaccatttatttcctttttattttattttctttctttt-tatcaattttgaa----cttgctatgagatatcatttttctacttttaactt--gcagGATGTG---GAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA
         | | ||||| ||   || ||  |||  ||  |  ||||| ||| |   | |||    | ||      ||||  || | |   | | |  |||   |||||||     |  || ||||| ||    ||||||||||||||||||||||| ||||||||||| ||    || || |||||||||||||||||||| || |   
-------cctaagcatttgttcttttattggtttggttgataccttttctataagcgtggaaggctcctgagtaatgataaaatgtgttggcgtgttccttcgacagGATGAACACGGCGAAGACAATTTCTGTATTGTTTTTGCAGCTATGGGAGTTAACATGGAGACAGCTACCTTCTTCAAACGTGATTTCGAGGAAAACGGGT---

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 3'ss of exon 6
gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagatatcatttttctacttttaacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA-----------------------------
                                                                                                          |  || |||||||||   || ||||| || ||||||||||| ||||||||||| ||    || || |||||||||||||| ||||||||||| |                             
------------------------------------------------------------------------------------------------------gcccggtgaagacaacttttgtatcgttttcgctgctatgggagTTAACATGGAGACAGCTACTTTCTTCAAACGTGATTTCGAAGAAAATGGATCTATGGAGAGAGTGACACTTTTTCTCAACTTG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ11911 (Selaginella moellendorffii), 3'ss of exon 6
gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagatatcatttttctacttttaacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA
                               |  | ||  ||||  ||||||   | |    ||| |  ||   || | |||  |  |  || |  ||  ||||| |||   ||||||||||| || || |||||||||||||| || ||||||||||||||||||||||| ||| | ||||| |||||||||||||| |
------------------------------gtacaattgttttccgtttatcttctgtctg-ttgttgagactgatgagtttctt--tcgtatccagCGTGATGTTGAA---GACAACTTTGCAATCGTCTTTGCAGCTATGGGTGTGAACATGGAGACTGCACAGTTTTTCAAAAGGGATTTTGAGGAAAATGGATCGA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ13375 (Selaginella moellendorffii), 3'ss of exon 6
gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagatatcatttttctacttt-taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA
                                   |  | ||  |||   |  || ||     || | |      | ||   | |  ||  || |  ||  ||||| |||   ||||||||||| || || |||||||||||||| || ||||||||||||||||||||||| ||| | ||||| |||||||||||||| |
----------------------------------gtacttttgttttccgtttatcttctgtctgttgttgagactgatgagtttctttcgtatccagCGTGATGTTGAA---GACAACTTTGCAATCGTCTTTGCAGCTATGGGTGTGAACATGGAGACTGCACAGTTTTTCAAAAGAGATTTTGAGGAAAATGGATCGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30327898|gb|CD011160.1|CD011160
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAATTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|110730165|gb|EE106929.1|EE106929
EST:     GGCCGGCTGGTCCTGTAAAGAAGTTGGANAAATCTGGAAGTCTCCTTGAG                         GATGTGGAAGAAGACAA-TTTGCCATTGTTTT-GCAGCCATGGGA
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGA
EST: gi|30129885|gb|CB915224.1|CB915224
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAATTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|30325484|gb|CD008746.1|CD008746
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAATTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|33402634|gb|CF208261.1|CF208261
EST:     GGCTGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|56409259|gb|CX017511.1|CX017511
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|156737783|gb|EV241904.1|EV241904
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|30323990|gb|CD007252.1|CD007252
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAATTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|32248996|gb|CD714815.1|CD714815
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAATTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|71859980|gb|DT009035.1|DT009035
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|71862037|gb|DT011092.1|DT011092
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|34542425|gb|CF510657.1|CF510657
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTAGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|27755418|gb|CB036173.1|CB036173
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAATTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|32249022|gb|CD714841.1|CD714841
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAATTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|46917753|gb|CN547082.1|CN547082
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|110424996|gb|EC991371.1|EC991371
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|56409525|gb|CX017777.1|CX017777
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
EST: gi|56409500|gb|CX017752.1|CX017752
EST:     GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAG                         GATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC
genomic: GGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgtatggtaga ... taacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatcaattttgaacttgctatgagatatcatttttctacttttaacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA
                                          ttttaac  putative branch site (score: 2)
                              tcatttttctactttt  CT-rich tract
                           atatcatttttctact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagatatcatttttctacttttaacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - ccattta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgag