1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atttactgccagagccaacattattaaaatcttgtatttgcatctattcgtactattcctcagagcaattttattaagttgtggactatttttgatgcagGAGTTTTTTGGTCAATATTCCAACAACTAGAGGAAGTACTAAAAAATAAGTTTTGTAGAGAAAAGGCTTCTTAGATTTGTCGTACTCTTATCTGGGAACA
species | Vitis vinifera |
transcript | Vv03s0038g02100.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
attcgtactattcctcagagcaattttattaagttgtggactatttttgatgcagGAGTTTTTTGGTCAATATTCCAACAACTAGAGGAAGTACTAAAAAATAAGTTTTGTAGAGAAAAGGCTTCTTAGATTTGTCGTACTCTTATCTGGGAACA
ttttgat putative branch site (score: 4)
ctattttt CT-rich tract
aattttattaagttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttactgccagagccaacattattaaaatcttgtatttgcatctattcgtactattcctcagagcaattttattaagttgtggactatttttgatgcagGAGTTTTTTGGTCAATATTCCAACAACTAGAGGAAGTACTAAAAAATAAGTTTTGTAGAGAAAAGGCTTCTTAGATTTGTCGTACTCTTATCTGGGAACA
- - actgcca
- - - - - - -gccaaca
- - - - - - - - - - - attaaaa
- - - - - - - - - - - - - - - - - - - -gcatcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgga