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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattgctgaatctatttacttggtgttgtttctgaagctgcattatcgggttcttatgattacaagaaataatgagcataaatcttattctttgcatgtgctctgcagGATTGGTCAGGTCAGAATGCAAGCAGCATAGCTTCAGAGATATGTGGATTCATCACTGTCCTTTCAGGAACAATCATACTGCATGCAACAAGGGAACAGG

Basic information

species Vitis vinifera
transcript Vv03s0038g01940.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g01940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G03390.1 (Glycine max), 3'ss of exon 7
gtagattgctgaatctatttacttggtgttgtttctgaagctgcattatcgggttcttatgattacaagaaataatgagcataaatcttattctttgcatgtgctctgcagGATTGGTCAGGTCAGAATGCAAGCAGCATAGCTTCAGAGATATGTGGATTCATCACTGTCCTTTCAGGAACAATCATACTGCATGCAACAAGGGAACAGG
|||   |  |  ||  || |   |    ||| |||    | ||   | ||    | || |  || |   |||||         || |||     ||     | || | ||||||||||| |||||| |||  ||||||||||| || ||||||||||||||||||||||| ||| |||||||||||||| ||||    || || |||||||
gtatgataatagattcatatttct----ttgattcatttggtgatatctcaaacttttctttttgctgaaaataggatatgacaagcttgactatt-----tacttt-cagGATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACTGTTCTTACAGGAACAATCATATTGCACATGACTAGAGAACAGG

upper sequence: Vv03s0038g01940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G11230.1 (Glycine max), 3'ss of exon 3
--gtagattgctg-aatctatttacttggtgttgtttctgaagctgcattatcgggttcttatgattac-aagaaataatg-agcataaatcttattctttgcatgtgctctgcagGATTGGTCA-GGTCAGAATGCAAGCAGCATAGCTTCAGAGATATGTGGATTCATCACTGTCCTTTCAGGAACAATCATACTGCATGCAACAAGGGAACAGG
   ||   |     ||| || | | ||  | || || || | |    ||  ||    | || |  || |  |  ||||    |  | |||  | | | ||| |        | |||||||||||  |||||| ||   ||||||||||| || ||||||||||||||||||||||| ||| |||||||||||||| ||||    || || |||||| 
gtttaaggtatgataatatactcatttttt-ttattccttaggtgatatc-tcaaacttttctttttgctgaacaataggatatgacaaacttgactgtttac-------tttcagGATTGGTCCCGGTCAGGATATCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACTGTTCTTACAGGAACAATCATATTGCACATGACTAGAGAACAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189643|gb|CF608992.1|CF608992
EST:     ATGTCATGTTCACAACTCTGACTATAAGTGCAAGTGCAATAATGTTCAAG                         GATTGGTCAGGTCAGAATGCAAGCAGCATAGCTTCAGAGATATGTGGATTC
genomic: ATGTCATGTTCACAACTCTGACTATAAGTGCAAGTGCAATAATGTTCAAGgtagattgct ... tgctctgcagGATTGGTCAGGTCAGAATGCAAGCAGCATAGCTTCAGAGATATGTGGATTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgattacaagaaataatgagcataaatcttattctttgcatgtgctctgcagGATTGGTCAGGTCAGAATGCAAGCAGCATAGCTTCAGAGATATGTGGATTCATCACTGTCCTTTCAGGAACAATCATACTGCATGCAACAAGGGAACAGG
                        ataaatcttattcttt  TA-rich tract