Sequence
atgc intronic sequence ATGC exonic sequencegtatgattttagtcatagattttctaatctcctttgttagcacttttctttttcgttccaatgatttcatgtctatggtagtttgtacaagaacatcccagcttgttcatttttgcttctgcattttgaatattaaataagtttcaaactgataagatgttgatatgcagtagAAAGTGGAGCCAGATCGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAATCAGGAGCTGTGGATCGTGCTTTTGATGTGTTAGCAGAAATGAGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os10g10170.2 (Oryza sativa), 3'ss of exon 5
gtatgattttagtcatagattttctaatctcctttgttagcacttttctttttcgttccaatgatttcatgtctatggtagtttgtacaagaacatcccagcttgttcatttttgcttctgcattttgaatattaaataagtttcaaactgataagatgttgatatgcagtagAAAGTGGAGCCAGATCGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAATCAGGAGCTGTGGATCGTGCTTTTGATGTGTTAGCAGAAATGAGGG
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-------------------------------gtgaagtggtagatattttttctttttatattacatgtcttccat--tcacctgtgctgcaa-atgcta--ctggtgaatcacttctatgcgctttccatgtt-------tgttgaacttactgggccatact-tgcagtagAAGGTGAAGCCAGATCGAGTTGTCTTTAATGCTTTGATCAGTGCATGCGGTGAATCTGGAGCGGTTGCTCGAGCTTTTGATGTTCTATCAGAAATGACAG
upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G03760.1 (Glycine max), 3'ss of exon 7
gtatgattttagtcatagattttctaatctcctttgttagcacttttctttttcgttccaatgatttcatgtctatggtagtttgtacaagaacatcccagcttgttcatttttgcttctgcattttgaatattaaataagtttcaaactgataagatgttgatatgcagtagAAAGTGGAGCCAGATCGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAATCAGGAGCTGTGGATCGTGCTTTTGATGTGTTAGCAGAAATGAGGG
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-------------------------------------------------------gtacaattattgca-acttgtatt--tctaaagaactatattcacagtggtatgagttgagttcctcccagttttttttaattg---tacatgctgatgtgatgttta-atgcagtagAATGTGAAGCCAGACCGTGTTGTATTCAATGCACTTATAGCTGCCTGTGCTCAATCAGGAGCAGTAGATCGTGCTTTTGATGTGTTAGCAGAAATGGCAG
upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G35270.1 (Glycine max), 3'ss of exon 6
gtatgattttagtcatagattttctaatctcctttgttagcacttttctttttcgttccaatgatttcatgtctatggtagtttgtacaagaacatcccagcttgttcatttttgcttctgcattttgaatattaaataagtttcaaactgataagatgttgatatgcagtagAAAGTGGAGCCAGATCGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAATCAGGAGCTGTGGATCGTGCTTTTGATGTGTTAGCAGAAATGAGGG
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-------------------------------------------------------gtacaattattgcaaa---atgtatttctaaagaactatattcacagtggtatgagttgagttcc---tcccagttttttaattg--tacatgctgatgtgatgttta-atgcagtagAATGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCTTGTGCCCAATCAGGAGCATTAGATCGTGCTTTTGATGTGTTAGCAGAAATGACAG
upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G34830.1 (Arabidopsis thaliana), 3'ss of exon 7
----gtatgattttagtcatagattttctaatctcctttgttagcacttttctttttcgttccaatgatttcatgtctatggtagtttgtacaagaacatcccagcttgttcatttttgcttctgcattttgaatattaaataagtt-tcaaactgataagatgttgatatgcagtagAAAGTGGAGCCAGATCGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAATCAGGAGCTGTGGATCGTGCTTTTGATGTGTTAGCAGAAATGAGGG
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gtaagcatgccacaagtt-tggatgccctcctatcatgtgtttagatttcaaaaaata--ccctatttcttcatggctacagttttttttttttttaattct--gcttat--atgttcatttctgc-tttggaatctcaaatcaattattacattgatgacatgttcg-atgcagtagAATGTTAAGCCAGACCGGGTTGTATTCAATGCCCTCATCTCTGCATGTGGTCAATCAGGAGCTGTCGACCGTGCTTTTGATGTGTTAGCTGAAATGAAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgcattttgaatattaaataagtttcaaactgataagatgttgatatgcagtagAAAGTGGAGCCAGATCGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAATCAGGAGCTGTGGATCGTGCTTTTGATGTGTTAGCAGAAATGAGGG
ttttgaatattaaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgattttagtcatagattttctaatctcctttgttagcacttttctttttcgttccaatgatttcatgtctatggtagtttgtacaagaacatcccagcttgttcatttttgcttctgcattttgaatattaaataagtttcaaactgataagatgttgatatgcagtagAAAGTGGAGCCAGATCGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAATCAGGAGCTGTGGATCGTGCTTTTGATGTGTTAGCAGAAATGAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT