Sequence
atgc intronic sequence ATGC exonic sequencegtaagattagcacatatcttgtataattctgtcttctatgttgtaaatgtctcctatttgaaacgatactggagctaaattatgttctacaattcagCATGACAGAGCCACAGCCGAAGTACTCTGCTTATCGTGAAGCCAGTTTTGGACATGCCATTTTTGACACCAAGAACCGAACCCATGCTCAGTATAGTTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g00250.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G01000.1 (Glycine max), 3'ss of exon 7
gtaagattagcacatatcttgtataattctgtcttctatgttgtaaatgtctcctatttgaaacgatactggagctaaattatgttctacaa--ttcagCATGACAGAGCCACAGCCGAAGTACTCTGCTTATCGTGAAGCCAGTTTTGGACATGCCATTTTTGACACCAAGAACCGAACCCATGCTCAGTATAGTTGG
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-----gtaagttcattatatgtaacatgatgagtcttgt----cacatttcttcttatttttatgcctctaagtctgatataaatgacatgagttgcagCATGACAGAACCACAGCCAAAGTATTCTGCATTCCGAGAGGCCAGCTTTGGACATGCCATTTTTGACATAACGAACCGAACTCATGCTCACTATAGCTGG
upper sequence: Vv03s0038g00250.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G36360.1 (Glycine max), 3'ss of exon 7
gtaagattagcacatatcttgtataattctgtcttctatgttgtaaatgtctcctatt-tgaaacgatactggagctaaattatgttctacaattcagCATGACAGAGCCACAGCCGAAGTACTCTGCTTATCGTGAAGCCAGTTTTGGACATGCCATTTTTGACACCAAGAACCGAACCCATGCTCAGTATAGTTGG
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-----gtaagttcattatatgtaacatgatgagtcttatcacatttcttcttacttttatgccactaagtctgatataaacgacatttga-gctgcagCATGACAGAACCACAGCCAGAGTATTCTTCATTCCGAGAGGCCAGCTTTGGACATGCCATTTTTGACATAACGAACCGAACTCATGCTCACTACAGCTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaaatgtctcctatttgaaacgatactggagctaaattatgttctacaattcagCATGACAGAGCCACAGCCGAAGTACTCTGCTTATCGTGAAGCCAGTTTTGGACATGCCATTTTTGACACCAAGAACCGAACCCATGCTCAGTATAGTTGG
agctaaa putative branch site (score: 3)
taaattatgttcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagattagcacatatcttgtataattctgtcttctatgttgtaaatgtctcctatttgaaacgatactggagctaaattatgttctacaattcagCATGACAGAGCCACAGCCGAAGTACTCTGCTTATCGTGAAGCCAGTTTTGGACATGCCATTTTTGACACCAAGAACCGAACCCATGCTCAGTATAGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC