Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtgctgctgcttgattttgcttgtgcgttttcattttttggatacctgttttttaaggggaaaaaaaaaataaaatctaaaatgtgtttatattgtccttagGTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCACCATGGTACAATGCACATACAAGGTAATCGCCAACATTCATGCAAACTCA

Basic information

species Vitis vinifera
transcript Vv02s0154g00240.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0154g00240.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G04340.2 (Glycine max), 3'ss of exon 7
gtgtgtgctgctgcttgattttgcttgtgcgttttcattttttggatacctgttttttaaggggaaaaaaaaaataaaatctaaaatgtgtttatattgtccttagGTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCACCATGGTACAATGCACATACAAGGTAATCGCCAACATTCATGCAAACTCA
 |    |     |   |   | ||||       ||||| || |   ||  | | ||  ||     ||| ||   | || | |||  |   ||| | || |||| |||||||||| || |||||||||||||||||||| ||| | ||||||||||| ||||| |  ||| |||| | ||||||||| ||| |||| |||| |||| 
-taaaagaaaacggagggaatagctttctaagcttcatattataagtatttatatt--aaattctaaataattgttaattgtaa--tccttttgttttctcct-agGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACATCCGAGGTAATCGTCAATATTCGTGCAGACTCC

upper sequence: Vv02s0154g00240.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G14820.1 (Glycine max), 3'ss of exon 7
gtgtgtgctgctgcttgattttgcttgtgcgttttcattttttggatacctgttttttaaggggaaaaaaaaaataaaatctaaaatgtgtttatattgtccttagGTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCACCATGGTACAATGCACATACAAGGTAATCGCCAACATTCATGCAAACTCA
     |  |  |  ||||    |   |   ||  |   ||| |      |   ||| ||     |||  | ||||||    || |||  |||| | ||   | ||||||||||| || |||||||||||||||||||| ||| | ||||||||||| ||||| |  ||| || | |  |||||||||||| |||| |||| |||||
--tcctttttatatttgagagcggaggcaggtaatagctttctaagcttcatatttatatt---aaattataaataattgttataat-cgtttttgtttctcctagGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACGTCCGTGGTAATCGCCAATATTCGTGCAGACTCA

upper sequence: Vv02s0154g00240.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G03420.2 (Glycine max), 3'ss of exon 8
gtgtgtgctgctgcttgattttgcttgtgcgttttcattttttggatacctgttttttaaggggaaaaaaaaaataaaatctaaaatgtgtttatattgtccttagGTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCACCATGGTACAATGCACATACAAGGTAATCGCCAACATTCATGCAAACTCA
|||||   ||     | |   |   | |        |||  | | |||  |  | | |||      ||  ||  | |    ||   | ||||| || | |   |||||||| ||||| || ||||||||||||||||| ||| | || |||||||| ||||| |  ||| | ||||  ||||||||   | ||||||||| |||||
gtgtgcattgtaaaatcacactatctat-------tattgatcgtatatattctctctaa------aattaatgttatgattattgt-tgtttctactat---tagGTCACCACCACGATCTATAATCTTATCCTTGGGAAAATATACTGTGATCATCATGGGAACATGGATATACGTGGTAATCGTACATATTCATGCAGACTCA

upper sequence: Vv02s0154g00240.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G41940.1 (Glycine max), 3'ss of exon 6
-------------------------------gtgtgtgctgctgcttgattttgcttgtgcgttttcattttttggatacctgttttttaaggggaaaaaaaaaataaaatctaaaatgt-gtttatattgtccttagGTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCACCATGGTACAATGCACATACAAGGTAATCGCCAACATTCATGCAAACTCA
                                |  |       ||  | || |||| | |  ||  | ||  |   ||   || |  |  |          ||| |||  |   || ||| |||  | ||    ||||||||| ||||| || ||||||||||||||||| ||| | || |||||||| ||||| |  ||| | ||||  ||||||||   | ||||||||| |||||
gtgtgcattgtaaaatcactatctataaacattccgccaattcgcccggttgtgctagcgacttgcctttaataaaat---tgatcgtatatattctctctaaattaatgttataattgttgttgtttttactattagGTCACCACCACGATCTATAATCTTATCCTTGGGAAAATATACTGTGATCATCATGGGAGCATGGATATACGCGGTAATCGTACATATTCATGCAGACTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttttaaggggaaaaaaaaaataaaatctaaaatgtgtttatattgtccttagGTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCACCATGGTACAATGCACATACAAGGTAATCGCCAACATTCATGCAAACTCA
                           atctaaa  putative branch site (score: 3)
                                             ttgtcctt  putative PPT
             aaaaaaaaaataaaat  TA-rich tract