Sequence
atgc intronic sequence ATGC exonic sequence...tttctctctaacaagaccctcacttgagttcatatatacatgttaaaccttgtattgatgtatttatggtgacagtaataaaaagtagtggtaaatgcagGCAAACCAGAGGATCATTGATGCAGTTGCAACGCGTTTAGAAGTTCCACCAGAGCGGGTCATATCAAACCTGGCTCAGTATGGTAACACAAGTGCAGCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G44350.1 (Glycine max), 3'ss of exon 7
tttctctctaacaagaccctcacttg-agttcatatatacatgttaaaccttgtattgatgtatttatggtgacagt-aataaaaagtagtggtaaatgcagGCAAACCAGAGGATCATTGATGCAGTTGCAACGCGTTTAGAAGTTCCACCAGAGCGGGTCATATCAAACCTGGCTCAGTATGGTAACACAAGTGCAGCAT-
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tatcattttggttaacttgggaattgcacggcata-attgatacta--tcttgtcgaaaggtgattttacatacacttagggtgccttcataataagtgcaggCAAACCAGAGGATTATTGATGCAGTTGCCACTCGGTTAGAACTCCCCTCAGAACGGGTGATATCAAACTTAGCTAATTATGGTAACACAAGTGCAGCTTC
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G41380.1 (Glycine max), 3'ss of exon 7
-tttctctctaacaagaccctcacttgagttcatatatacatgttaa-accttgtattgatgtatttatggtgacagt-aataaaaagtagtggtaaatgcagGCAAACCAGAGGATCATTGATGCAGTTGCAACGCGTTTAGAAGTTCCACCAGAGCGGGTCATATCAAACCTGGCTCAGTATGGTAACACAAGTGCAGCAT
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atatcattttagttaacttgggaattgcatg---gcatacttcataatatcttgtagaaaggtgatgttacatacacttagggggccttcataataagtgcagGCAAACCAGAGGATTATTGACGCAGTTGCCACTCGGTTAGAACTCCCCTCAGAACGTGTGATATCAAATTTGGCCAATTATGGTAACACAAGTGCAGCTT
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G00550.1 (Glycine max), 3'ss of exon 7
---tttctctctaacaagaccctcacttgagttcatatatacatgttaaaccttgtattgatgtatttatggtgacagtaataaaaagtagtggtaaatgcagGCAAACCAGAGGATCATTGATGCAGTTGCAACGCGTTTAGAAGTTCCACCAGAGCGGGTCATATCAAACCTGGCTCAGTATGGTAACACAAGTGCAGCAT
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tactatgggaattgcatgacatgcttgataatatattggagaaaggcaaaattaaggttg-catacttgcacttagggtgccttaattcat--ataagtgcagGCAAACAAGAGGATTATCGATGCAGTTGCCGCTCGGTTAGAACTCCCCTCAGAACGGGTGATATCAAATTTGGCTAATAATAGTAACACAAGTGCAGCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110394481|gb|EC959504.1|EC959504EST: AGAAGGCTGGTCTCAGTGGATCTAACATCGATTGGTTACTGCTCCATCAG GCAAACCAGAGGATCATTGATGCAGTTGCAACGCGTTTAGAAGTTCCACCA
genomic: AGAAGGCTGGTCTCAGTGGATCTAACATCGATTGGTTACTGCTCCATCAGgtataattga ... gtaaatgcagGCAAACCAGAGGATCATTGATGCAGTTGCAACGCGTTTAGAAGTTCCACCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaccttgtattgatgtatttatggtgacagtaataaaaagtagtggtaaatgcagGCAAACCAGAGGATCATTGATGCAGTTGCAACGCGTTTAGAAGTTCCACCAGAGCGGGTCATATCAAACCTGGCTCAGTATGGTAACACAAGTGCAGCAT
tattgat putative branch site (score: 3)
tattgatgtatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttctctctaacaagaccctcacttgagttcatatatacatgttaaaccttgtattgatgtatttatggtgacagtaataaaaagtagtggtaaatgcagGCAAACCAGAGGATCATTGATGCAGTTGCAACGCGTTTAGAAGTTCCACCAGAGCGGGTCATATCAAACCTGGCTCAGTATGGTAACACAAGTGCAGCAT
- tctctct
- - - - -aacaaga
- - - - - - - - ccctcac
- - - - - - - - - - - - - - - - - - -acatgtt
- - - - - - - - - - - - - - - - - - - - - - - -ccttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa