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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattttctccctgaacacccttgcatatttttcctcaagatatggagattttaggcagtggttcttattagtaaatttcatcaacttcatatgttctttccatgcttagGTTTTAGAGGTCCGTCCTGTAATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTG

Basic information

species Vitis vinifera
transcript Vv02s0154g00110.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G178546_T01 (Zea mays), 3'ss of exon 8
gtaatattttctccctgaacacccttgcatatttttcctcaagatatggagattttaggcagtggttcttattagtaaatttcatcaac-ttcatatgttctttccatgcttagGTTTTAGAGGTCCGTCCTGTAATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTG------------------------------
        |      |   |||  ||| |    |||||| |  | |   |  | ||    ||  |||        | ||||  || ||  ||||      || ||||     ||||||| |||||||||||||| ||||| |||||||| || ||||| || || ||| | || ||||| ||||                              
-------gtgaggattatgcactgttgtaaggctttccttatcaaa-atatttgttgtaaagcagtt--------tgaattggattaatattcaatcacactctcca-atccagGTTTTTGAGGTCCGTCCTGTTATTGATTGGAACAAAGGTAAAGCTGTGGAGTTTTTACTTGAATCGCTTGGGCTCAGCGAGAGTGAAGATGTTCTCCCTA

upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G14780.1 (Glycine max), 3'ss of exon 7
--------------------------------------------------------------------gtaatattttctccctgaacacccttgcatatttttcctcaag---atatggagattttaggcagtggttcttattagtaaatttcatcaacttcatatgt-tctttccatgct-tagGTTTTAGAGGTCCGTCCTGTAATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTG
                                                                     | ||| || ||   | |  ||  | | |  |   |  |||||    |      | |  |    ||  |||   |   || ||   |   |  || |   | | |||   ||   ||||||||||| || |||||||| ||||| ||||| || || ||||| ||||||||| | || ||||| || |
gtatgtatgacgagcattcttaattggaaaatagacactttgttcttagcataatttttaaacattttatgatagttactaatttataactttagtaactcgatattcaagtttgttcaagcactccatagtgtaattcaattagctacatcataaatatctcttccctatgttttggtgtggtagGTTTTAGAAGTTCGTCCTGTGATTGATTGGAATAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAG

upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G22590.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaatattttctccctgaacacccttgcatatttttcctcaagatatggagattttaggcagtggttcttattagtaaatttcatcaacttcatatgttctttcc---atgcttagGTTTTAGAGGTCCGTCCTGTAATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTG------------------------------
                                   | ||   |  ||  | ||      |  |||||  |  || || ||   |  | ||| | ||  | ||      ||| | ||||||||||||| |||||||| ||||| |||||||| || |||||||| || |||||  | || || || |                              
----------------------------------gtacttgtggaataaacatc----actctggtttctcatattagatccaaataccttaacatagttttgttgatatgatcagGTTTTAGAGGTGCGTCCTGTGATTGAGTGGAACAAAGGAAAAGCAGTAGAGTTTCTGTTAGAGTCTCTCGGATTAAGCAACAACGATGAGTTCCTCCCAA

upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G12430.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaatattttctccctgaacacccttgcatatttttcctcaagatatggagattttaggcagtggttcttattagtaaatttcatcaacttcatatgttctttccatgctta-gGTTTTAGAGGTCCGTCCTGTAATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTG
                               ||| |  | |   ||  |||||  |  ||  |     ||| |  |   | | |    ||| ||      |||   || | | |||||||||||| |||||||| || ||||||||||| || | ||| || || |||||  | ||||| || |
------------------------------gtttgtgattagctta-agagatacttagc--ttacgtttaatcatcggtcttaatttcttgattatcattttttgtgttaaagGTTTTAGAGGTTCGTCCTGTGATAGACTGGAACAAAGGAAGAGCGGTCGAGTTTCTATTAGAATCTCTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033137|gb|FQ446490.1|FQ446490
EST:     ATGATGTTCTCAAGGATTATCCTCGTTTACGACTAACCCATGGGCGGAAG                         GTTTTAGAGGTCCGTCCTGTGATTGACTGGAACAAGGGGAAAGCAGTTGAA
genomic: ATGATGTTCTCAAAGATTATCCTCGTTTACGACTAACCCATGGCCGGAAGgtaatatttt ... ccatgcttagGTTTTAGAGGTCCGTCCTGTAATTGACTGGAACAAGGGGAAAGCAGTTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagtggttcttattagtaaatttcatcaacttcatatgttctttccatgcttagGTTTTAGAGGTCCGTCCTGTAATTGACTGGAACAAGGGGAAAGCAGTTGAATTTCTTCTCGAATCACTTG
                                       ttctttccatgctt  CT-rich tract
       ttcttattagtaaatt  TA-rich tract