Sequence
atgc intronic sequence ATGC exonic sequence...aaatgcattgatgcatgtgtcatagcatctgcttctggttaatgttttgaagactatacattttcaaggacaaatttaatctatttgagaacttatgcagGAGGTTTCTTGACATTTAAGCCTTCTATTCCAAAGAGCCTGTTGCTGGATGGGGAGCATAATCTTGAATCACATTTTGCTCTCATTAATTACCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G35690.1 (Glycine max), 3'ss of exon 7
aaatgcattgatgcatgtgtcatagcatctgcttctggttaatgttttgaagactatacattttcaagg---acaaatttaatctatttgag-aacttatgcagGAGGTTTCTTGACATTTAAGCCTTCTATTCCAAAGAGCCTGTTGCTGGATGGGGAGCATAATCTTGAATCACATTTTGCTCTCATTAATTACCAA
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--ttatgctgaaaacccaaagttggcacttaatgtt--tcaatgcattattttcattatctgcctatggttgatatgttgactcctcatgaggaacttttgcagGGGGCTTCTTGTCATTTAAGCCTTCTATTCCAAAAAGCTTGTTGCTAAGTGGGAAGCATACCATTGAATCACATTTTACACTTGTTAATTACCAA
upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G08350.2 (Glycine max), 3'ss of exon 6
-aaatgcattgatgcatgtgtcatagcatctgcttctggttaatgttttgaagactatacattttcaaggaca--aatttaatctatttgagaacttatgcagGAGGTTTCTTGACATTTAAGCCTTCTATTCCAAAGAGCCTGTTGCTGGATGGGGAGCATAATCTTGAATCACATTTTGCTCTCATTAATTACCAA
|| || ||| || || | || || |||||| || || | | ||| | | | || || || |||| | | ||||| |||||| ||||||||| |||||||||| ||||||||| | | | ||||| ||||||||||||| |||||||||||||| |||| |||||||||||
taagcatatgaatggattggttacagtttcctcttctgattgat---tagtctactctgtttcatgaattactgcaacctaatttttagataaacttttgcagGGGGTTTCTTGTCATTTAAGCCACATATTCCAAAAAACTTATTGCTAAGTGGGGAGCATAATGTTGAATCACATTTTACTCTTGTTAATTACCAA
upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G20730.1 (Glycine max), 3'ss of exon 7
--aaatgcattgatgcatgtgtcatagcatctgcttctggttaatgttttgaagactatacattttcaaggacaaatttaatctatttgagaacttatgcagGAGGTTTCTTGACATTTAAGCCTTCTATTCCAAAGAGCCTGTTGCTGGATGGGGAGCATAATCTTGAATCACATTTTGCTCTCATTAATTACCAA
| || ||| || || | || || |||||| | ||| | | | | | | | || |||| | | ||||| |||||| ||||||||| |||||||||| ||||||||| | | ||||||| ||||||||||||| |||||||||||||| |||| ||||||| |||
tagagcatatgaatggattggttacagtttccacttctgatcaattagtcaactctttcatgaaattactgc--aacctaatttttagataaacttttgcagGGGGTTTCTTGTCATTTAAGCCACATATTCCAAAAAACTTGTTGCTAAGTGGGGAGCATAATGTTGAATCACATTTTACTCTTGTTAATTATCAA
upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G09650.1 (Glycine max), 3'ss of exon 5
aaatgcattgatgcatgtgtcatagcatctgcttctggttaatgttttgaagactatacattt-tcaaggacaaatttaatctatttgagaa--cttatgcagGAGGTTTCTTGACATTTAAGCCTTCTATTCCAAAGAGCCTGTTGCTGGATGGGGAGCATAATCTTGAATCACATTTTGCTCTCATTAATTACCAA
| ||| |||||| | || | || | | ||| | | | || | || | || | || | || |||||| || |||||| |||||||||| ||||||||||| ||| ||||||| |||| | |||| ||||||| |||||| || |||||||||||
---tatgctgaaaacccaaagttagcatttaatttttcaatgcattatttttattatctgcctatgattgatatgttgactccttgaaaggaactttttgcagGGGGCTTCTTGTCATTTAAGCCATCTATTCCAAAAAGCTTGTTGCTAAGTGGGAATCATACCATTGAATCGCATTTTAGACTTGTTAATTACCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgaagactatacattttcaaggacaaatttaatctatttgagaacttatgcagGAGGTTTCTTGACATTTAAGCCTTCTATTCCAAAGAGCCTGTTGCTGGATGGGGAGCATAATCTTGAATCACATTTTGCTCTCATTAATTACCAA
atttaat putative branch site (score: 4)
acaaatttaatctatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaatgcattgatgcatgtgtcatagcatctgcttctggttaatgttttgaagactatacattttcaaggacaaatttaatctatttgagaacttatgcagGAGGTTTCTTGACATTTAAGCCTTCTATTCCAAAGAGCCTGTTGCTGGATGGGGAGCATAATCTTGAATCACATTTTGCTCTCATTAATTACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- -tgcattg
- - - - - - -catgtgt
- - - - - - - - - - - - -catctgc
- - - - - - - - - - - - - - - - - - - - - - - -tgaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggacaaa