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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattctgttctatctggacactatttttgtcatttgttttctgcatgtaggcattattcacaaaactcttgtttattatcttagttgttggttctgatctacagGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAA

Basic information

species Vitis vinifera
transcript Vv02s0087g00690.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os01g68750.1 (Oryza sativa), 3'ss of exon 7
gtacattctgttctatctggacactatttttgtcatttgttttctgcatgtaggcattattcacaaaac-tcttgtttattatctta-gttgttggttctgatctacagGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAA
                         |||||  |    |||||||| | | ||  |||  | |  |  |  | || | |  ||  ||| |||| |   |   |  | ||| | || || ||||||||||| || |||||||| || | ||| || ||||| ||||| ||||| | ||| ||| | | ||||||||||||||||||  |||
----------------------gtgattttaatttcctgttttcttcttatat-catactccgtaccatgttttctgtggtagattatgttgattcattctactttcagATAATATGCTGGGTTTTGGGAGAATATGGAACAGCAGATGGGAAATATTCAGCTTCATATATTATTGGGAAGCTGTATGATGTGGCAGAGGCCCACCCAA

upper sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G146697_T03 (Zea mays), 3'ss of exon 7
gtacattctgttctatctggacactatttttgtcatttgttttctgcatgtaggcattattcacaaaactcttgtttattatcttagttgttggttctgatctacagGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAA
                        || || | |   ||||  | |  ||    | |||||      |  |   |  |||||| |  |||| |   | | || | ||| | || || ||||||||||| || |||||||| || | |||||| ||||| ||||| ||||| | ||| ||||| ||||||||||||||||||||    |
-----------------------gtagttgttttccttgtcctatctattccag-attat------agtttcgggatattatat--gttgattcatttcatgttcagATAATATGCTGGGTTTTGGGGGAATATGGAACAGCAGATGGAAAATATTCAGCTTCTTATATTATTGGGAAGTTGTGTGATGTGGCAGAGGCCCACCTCA

upper sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G031352_T01 (Zea mays), 3'ss of exon 6
gtacattctgttctatctggacactatttttgtcatttgttttctgcatgtaggcattattcacaaaactcttgtttattatcttagttgttggttc-tgatctacagGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAA
                               ||  ||  ||||||   |||      ||||| ||||       |||   || ||    |||| ||| | || | ||| | || || ||||| ||||| || |||||||| || | ||||||  |||| ||||| ||||| | ||| || || ||||||||||||||||||||    |
-------------------------------gtagttatttttct---tgtcctttctattc-caaactatagttttgggatgttttaagttgattcattatgttcagATAATATGCTGGGTGTTGGGGGAATATGGAACAGCAGATGGAAAACATTCGGCTTCTTATATTATTGGGAAATTGTGTGATGTGGCAGAGGCCCACCTCA

upper sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G20260.1 (Glycine max), 3'ss of exon 6
gtacattctgttctatctggacactatttttgtcatttgt-tttctgcatgtaggc-attattcacaaaact---cttgtttattatcttagttgttggttctgatctacagGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAA
|||  ||||    | |||   |  | ||||| |  ||| | ||||  ||  |     | | ||||   |        ||| | ||| | || |   | || || || ||||||| || ||||||||| |||| || ||||| || || | |||||||||||||||||||||||||||||| ||| |||||||||| ||||||||  ||||||
gtagtttctaactt-tctatcctttttttttatgttttatatttccccacttgttttacttttcaaggagtcagatctgtcttttagcataatatgtagtactaat-tacagGTAATCTGTTGGGTTCTGGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA

upper sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G08320.1 (Glycine max), 3'ss of exon 6
gtacattctgttctatctggacactat-ttttgtcatttgttttctgcatgtaggcattattcacaaaactcttgtttattatcttagttgttggttctgatctacagGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAA
|||| |||| | |  | |      ||| |||   || |||||||     |  ||     |  || |       ||| | ||| | || ||  | || ||||| ||||||| || ||||||||| | || || ||||| ||||| | |||||| ||||||||||| ||||||||||| ||| |||||||||| ||||||||  ||||||
gtactttctatcccttttatgttttatatttccccacttgttttacttttcaaga----agccaga-----tctgtcttttagcataattcgtagtactgat-tacagGTAATCTGTTGGGTTCTTGGGGAATATGGCACTGCTGATGGAAAATATTCTGCTTCGTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA

upper sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G35240.1 (Glycine max), 3'ss of exon 6
gtacattctgttctatctggacactatttttgtcatttgttttctgcatgtaggcattattcacaaaactcttgtttattatctt--agttgttggttctgatctacagGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAA
|||| |||| | | |  |   |  |   |||  | ||    || | |    | | |  ||| |  ||    ||||  | || |||  | |   |   | |    | ||||| || ||||||||| |||| || |||||||| |  | |||||||||||||||||||||||||| ||| |||||||||||  | ||||||||  |||| |
gtactttctatcccacttatgctttggattttcccttctcattttactccgaagaa--attga--aagtgtttgtagaataactttaactctctaagtattgattgcagGTCATCTGTTGGGTTCTGGGGGAATATGGAACAGTAGATGGAAAGTATTCTGCTTCCTATATCAGTGGGAAGTTATGTGACATTGCAGAGGCATATTCCA

upper sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G35650.1 (Glycine max), 3'ss of exon 6
gtacattctgttctatctggacactat-ttttgtcatttgttttctgcatgtaggcatta------ttcacaaaactcttgtttattatcttagttgttggttctgatctacagGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAA
|||| || | | | |  |   |  |   ||||  | | |  |||     || ||  ||||      ||    | | |    || | | | | |||   || ||   || | ||||| || ||||||||| |||| || || ||||| || | |||||||||||||||||| ||||||| ||| |||||||||||  | ||||||||  |||| |
gtactttatatcccacttatgctttggattttaccttctcgttttactctgaagaaattaaatgtgtttgttagaataactttaactctttaagt-actgattgcaatttgcagGTCATCTGTTGGGTTCTGGGGGAATACGGAACAGCAGATGGAAAGTATTCTGCTTCTTATATCAGTGGGAAGTTATGTGACATTGCAGAGGCATATTCCA

upper sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G31730.1 (Arabidopsis thaliana), 3'ss of exon 6
gtacattctgttctatctggacactatttttgtcatttgttttctgcatgtaggcattattcacaaaactcttgtttattatcttagttgttggttctgatctacagGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAA
                        |  ||||||  | || | ||| |   ||    || ||  |  |||   | ||| || |||||  | |||| | | | || ||||| |||| |||||||||||| || ||||| || || | ||| || |||||||| |||||||| | ||||||| | || ||||||||||| ||  | ||||
----------------------gttgattttgttctctgatctctccgcataccatttttttccgcaacgaatttttgtt-tctta-ctattgggtttaaacttcagGTCATTTCTTGGGTTTTGGGAGAATATGGCACAGCTGATGGGAAATATTCTGCCTCCTATATTAGTGGAAAGCTGTGCGATGTGGCAGATGCATACTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcattattcacaaaactcttgtttattatcttagttgttggttctgatctacagGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAA
                                          ttctgat  putative branch site (score: 3)
                   ttgtttattatctta  TA-rich tract