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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcaagaattttagctcctaccctgatctcacttccccagaaaatcctaggaaaatgcttaaaatttacaatgttttctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT

Basic information

species Vitis vinifera
transcript Vv02s0087g00400.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715153|gb|EE092874.1|EE092874
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110714669|gb|EE091838.1|EE091838
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|30128817|gb|CB914156.1|CB914156
EST:     AATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: AATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|22010091|gb|BQ795125.1|BQ795125
EST:     TCAGCACCAAAGTAAAATGCTTTGCAGATGCCCGGTTACTTTATCANCGC                         TAAGGATGTTTCANGAGCCAGCACA
genomic: TCAGCACCAAAGTAAAATGCTTTGCAGATGCC-GGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGC-AGCACA
EST: gi|110377757|gb|EC942842.1|EC942842
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|30251405|gb|CB969138.1|CB969138
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110391590|gb|EC956576.1|EC956576
EST:     CAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: CAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|18459501|gb|BM437779.1|BM437779
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110698014|gb|EE075544.1|EE075544
EST:     TCAGCACCAAAGTAAAATGCTTTGCAGATGCCCGGT-ACTTCATCAACGC                         TAAGGGATGTT-CAGGAGCAGCACACATTGAAAGGCTTCTACA-TGAAGTG
genomic: TCAGCACCAAAGTAAAATGCTTTGCAGATGCC-GGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGG-ATGTTTCAGGAGCAGCACACATTGAA-GGCTTCTACAGTGAAGTG
EST: gi|110375405|gb|EC940389.1|EC940389
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110685994|gb|EE063201.1|EE063201
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110687331|gb|EE064646.1|EE064646
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAAGAGCAGCACACATTGAA
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAA
EST: gi|110698866|gb|EE076852.1|EE076852
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|33410293|gb|CF215920.1|CF215920
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTA
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTA
EST: gi|110423673|gb|EC990024.1|EC990024
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110701134|gb|EE078400.1|EE078400
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110360568|gb|EC923781.1|EC923781
EST:     GCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110364047|gb|EC927689.1|EC927689
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110361656|gb|EC925145.1|EC925145
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110728091|gb|EE103366.1|EE103366
EST:     GCAGCACCCAAGTAAAATGCCTTGGC-GATGCCGGTTACTTCATCACCGC                         TAGGGATGTTTCAGGAGCA
genomic: TCAGCACCAAAGTAAAATGCTTTG-CAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCA
EST: gi|110698827|gb|EE076773.1|EE076773
EST:     TCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACCGC                         TAAG-ATGTTTCANGAGCAGCACACATTGAAGGCTTCTACCAGTGA-GTG
genomic: TCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAAC-GCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTAC-AGTGAAGTG
EST: gi|110375774|gb|EC940791.1|EC940791
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110698396|gb|EE075846.1|EE075846
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGG
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110396078|gb|EC961753.1|EC961753
EST:     CAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGC-TCTACAGTGAAGTGGT
genomic: CAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110369475|gb|EC933635.1|EC933635
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|33408383|gb|CF214010.1|CF214010
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|294964094|gb|GW837897.1|GW837897
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAACGATGTTTCAGGAGCAGCACA
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACA
EST: gi|110698242|gb|EE075557.1|EE075557
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAAGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|33410372|gb|CF215999.1|CF215999
EST:     CAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: CAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|18458990|gb|BM437268.1|BM437268
EST:     GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: GTCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|22012950|gb|BQ797984.1|BQ797984
EST:     AAGTAAAATGC-TTGCAGATGCCGG-TACTTCATCAACGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
genomic: AAGTAAAATGCTTTGCAGATGCCGGTTACTTCATCAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGT
EST: gi|110690730|gb|EE068155.1|EE068155
EST:     TCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCATNCA-CGC                         TAAGGATGTTTCAGGAGCAGCACACATTGAAGGC
genomic: TCAGCACCAAAGTAAAATGCTTTGCAGATGCCGGTTACTTCAT-CAACGCgtaagatcaa ... tctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttccccagaaaatcctaggaaaatgcttaaaatttacaatgttttctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT
                                          ttttctgtt  CT-rich tract
                    aaaatgcttaaaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagatcaagaattttagctcctaccctgatctcacttccccagaaaatcctaggaaaatgcttaaaatttacaatgttttctgttacagTAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG