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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgcagaatatatcaaacccccacttcaagatttcttcattttgccctaaacatgattttgttttcctatgctcatcagGGCTGTAACTTCTGCTGGTTCCTCTGAGCTAATAGCAGTCTCCTCACTATGCACCTATGACATCTATCGTACTTACATAAACCCGAATGCAAGTGGGAAG

Basic information

species Vitis vinifera
transcript Vv02s0033g01370.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01370.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G14790.1 (Glycine max), 3'ss of exon 8
---------------------------------------------------------------------------gtgagttgcagaatatatcaaacccccacttcaagatttcttcattttgccctaaacatgattttg---ttttcctatgctcatcagGGCTGTAACTTCTGCTGGTTCCTCTGAGCTAATAGCAGTCTCCTCACTATGCACCTATGACATCTATCGTACTTACATAAACCCGAATGCAAGTGGGAAG
                                                                            |    | ||     ||| | |   | |  |       ||||  || | |  |    ||| |||||   ||||  ||| |||| |||||| ||||||||||||||||| || || || || || || |||||| ||||||| ||||| ||||| || ||||||||||| || ||||||||||| |||
gtaagttactatcagaatccattgggaatactcttaatatgtctagataagattgaaatagcaaacggattaacaatttactacaaggcttataagaaaactatct---agcctctttgttctactttctg-atggttttgaccttttgatatactcaccagGGCAGTAACTTCTGCTGGTTCATCAGAACTCATTGCGGTGTCCTCATTATGCACATATGATATCTACCGAACTTACATAAATCCTAATGCAAGTGGAAAG

upper sequence: Vv02s0033g01370.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G45380.1 (Arabidopsis thaliana), 3'ss of exon 7
--------gtgagttgcagaatatatcaaacccccactt----caagatttcttcattttgccctaaacatgattt----tgttttcctatgctcatcagGGCTGTAACTTCTGCTGGTTCCTCTGAGCTAATAGCAGTCTCCTCACTATGCACCTATGACATCTATCGTACTTACATAAACCCGAATGCAAGTGGGAAG
         |  ||| |    || |  | |  || | ||     |  |  | | |  ||   || || |||||| |     | | |    || |||| ||||||||||| || |||||||| || |||||||| |||||||| || || |  || ||||||||||| || || ||||||||||| |  ||||  || |  
taagctgtcttggttacttcttacacaagaaacctagttagcatacaaaatatacgcttattccaaatcatgatgtattacggtatttgttgatcattagGGCTGTAACATCGGCTGGTTCTTCCGAGCTAATTGCAGTCTCATCGCTCTTTACATATGACATCTACCGAACATACATAAACCCTAGAGCAACCGGTAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaagatttcttcattttgccctaaacatgattttgttttcctatgctcatcagGGCTGTAACTTCTGCTGGTTCCTCTGAGCTAATAGCAGTCTCCTCACTATGCACCTATGACATCTATCGTACTTACATAAACCCGAATGCAAGTGGGAAG
                    ccctaaa  putative branch site (score: 3)
                                ttttgttttcctat  putative PPT
                               attttgtttt  TA-rich tract