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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtatatagttggaaagagactgaaattttatgaagtttgaaaaaatatccatatttttgtctgtagacactgaaattttatttccattttttccctccagATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTCTCTTTCCAGGATCGAG

Basic information

species Vitis vinifera
transcript Vv02s0033g01110.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G108829_T01 (Zea mays), 3'ss of exon 10
-----gtcagtatatagttggaaagagactgaaattttatgaagtttgaaaaaatatccatatttttgtctgtagacactgaaattttatttccattttttccctccagATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTCTCTTTCCAGGATCGAG
        | || |  | |    |    || |   ||| ||   ||| |        |||    |  |  ||||  |  ||| ||||  |  || |    || |   ||||||||||||||||||||| || |||||||| ||||| || |||| |||||||||||| ||| | ||
gtatgaaaaataaaaggcttactatttgcttagtgttt-tgtcttttcatgggtggaccaa--ctcagcttgtaacc--tgacatttcttcaccttgccatctcat-agATATGTGGGCAATGGGTGCCATAATGGCTGAGTTGTTGACACTCCATCCTCTCTTTCCTGGAACTAG

upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G178822_T01 (Zea mays), 3'ss of exon 11
---gtcagtatatagttggaaagagactgaaattttatgaagtttgaaaaaatatccatatttttgtctg--tagacactgaaattttatttccattttttccctccagATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTCTCTTTCCAGGATCGAG
      |  ||| |  |  ||| | |||  | ||   |   |||||   |   ||  ||             | |  |    |  ||| ||  | |      |    ||||||||||||||||||||| || ||||||||  |||| || |||| |||||||||||| ||| | ||
gtatgaaaaataaaactaaaaaaatact--atttgcttagtgtttgtctattcatggatggaccaactcaactcgtaatctgacatttcttcacctcgccatctcatagATATGTGGGCAATGGGTGCCATAATGGCTGAGCTGTTGACACTCCATCCTCTCTTTCCTGGAACCAG

upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G08080.1 (Glycine max), 3'ss of exon 7
-----------------------------------------------gtcagtatatagttggaaagagactgaaattttatgaagtttgaaaaaatatccatatttttgtctgtagacactgaaattttatttccattttttccctccagATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTCTCTTTCCAGGATCGAG
                                                 ||  | || || |   |||| || | |   |       ||| |   ||      ||         |    |||  || ||||      |||||   || ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || || || || ||
gtaagcatctgatattgaataattgccatttatggtgacttatgttttccaaaagattgtggtctagagtct-agacaatgcatttcttgtagtgatgaattaatgacaagtgttgagtactataagtttaacattttttttcatctgcagATATGTGGGCAATGGGTGCTATAATGGCTGAGTTGTTCACTCTCCGTCCTCTATTCCCCGGTTCCAG

upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G17580.1 (Glycine max), 3'ss of exon 7
-----------------------------------------------gtcagtatatagttggaaagagactgaaattttatgaagtttgaaaaaatatccatatttttgtctgtagacactgaaattttatttccattttttc-cctccagATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTCTCTTTCCAGGATCGAG
                                                 ||  | ||  | |   |||| || | |   |       ||| |   ||      ||         |  | |||| |  ||||| |   || ||||  || ||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| || || || || ||
gtgagcatctgatgttgaataattttcatttatggtgacttatgttttccaaaagattatggtctagagtct-agacaatgcattccttgtagtgatgaattgatgacaagtgttgaatactgtacatttatcttttttgtttcatctgcagATATGTGGGCAATGGGTGCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAG

upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G34610.1 (Glycine max), 3'ss of exon 7
gtcagtatatagttggaaagagactgaaattttatgaagtttga-aaaaatatccatatttttgtctgtagacactgaaat--------tttatt---tccattttttccctccagATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTCTCTTTCCAGGATCGAG
|| ||||| |  |||| |  |         ||||||   ||    ||   | ||   |||  ||    |    ||     |        ||||||   |||       || || |||||||||||||||||||||||| ||||||||  | ||  |||| |||||||| || |||||  | ||
gtgagtatctgattgggactaatggtgtcatttatgttcttcactaatgctttctgcattgatgatgatgagtaccatgctgccatttgtttattaactcccccccccccttctagATATGTGGGCAATGGGTGCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAG

upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G35190.2 (Glycine max), 3'ss of exon 7
gtcagtatatagttggaaa---gagactga--aat-------tttatgaagtttgaaaaaa-tatccatatttttgtctgtag--------acactgaaattttatttc----cattttttccc--tccagATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTCTCTTTCCAGGATCGAG
|| ||| | |   ||| |    | |||| |  |||       ||||||   ||    ||   | ||   |||  ||    |          |  ||   ||||| |||     |||||   |||  || ||| |||||||||||||||||||| ||||||||  | ||  |||| |||||||| || |||||  | ||
gtgagtgtctgactgggagtttgggactaactaatggtgtcatttatgttcttcactaacgctttctgcattgatgatgatgatgagtaccattctaccattttgtttattaacatttcccccccttctagACATGTGGGCAATGGGTGCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAG

upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ22662 (Selaginella moellendorffii), 3'ss of exon 5
gtcagtatatagttggaaagagactgaaattttatgaagtttgaaaaaatatccatatttttgtctgtagacactgaaattttatttccattttttccctccagATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTCTCTTTCCAGGATCGAG
||   |   |   | |   |   | | ||| ||||| | ||     |  || || |      |   |  |  |||| | |  | | |  |    |   |    || |||||||||||||||||||||||||||||  | || | |||| |                     
gtagcttcttttgttgttcgttgc-gtaatcttatgca-ttacctcagGTA-CCGTGCCCCGG--AGGTGTTACTGCAGTCGTCTCTGTACAACTCTGCGGTCGACATGTGGGCAATGGGTGCTATCATGGCTGAGCTTTTCAATCTCAGG--------------------

upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ11811 (Selaginella moellendorffii), 3'ss of exon 5
gtcagtatatagttggaaagagactgaaattttatgaagtttgaaaaaatatccatatttttgtctgtagacactgaaattttatttccattttttccctccagATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTCTCTTTCCAGGATCGAG
||   |   |   | |   |   | | ||| |||||   |||     |    || |  |   |   |  |  |||| | |  | | |  |    |   |    || |||||||||||||||||||||||||||||  | || | |||| |                     
gtagcttcttttgttgttcgttgc-gtaatcttatgc--tttacctcagGTACCGTGCTCCGG--AGGTGTTACTGCAGTCGTCTCTGTACAACTCTGCGGTCGACATGTGGGCAATGGGTGCTATCATGGCTGAGCTTTTCAATCTCAGG--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720107|gb|FC066739.1|FC066739
EST:     TCGAGCTCCAGAGGTTCTGCTTCAATCATCCACATATGGTTCTGCAGTTG                         ATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTC
genomic: TCGAGCTCCAGAGGTGCTGCTTCAATCATCCACATATGGTTCTGCAGTTGgtcagtatat ... ttccctccagATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTC
EST: gi|33404620|gb|CF210247.1|CF210247
EST:     TCGAGCTCCAGAGGTGCTGCTTCAATCATCCACATATGGTTCTGCAGTTG                         ATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTC
genomic: TCGAGCTCCAGAGGTGCTGCTTCAATCATCCACATATGGTTCTGCAGTTGgtcagtatat ... ttccctccagATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatccatatttttgtctgtagacactgaaattttatttccattttttccctccagATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTCTCTTTCCAGGATCGAG
                              ttttatttccattttt  CT-rich tract
                         tgaaattttatttcca  TA-rich tract