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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaactttgatgatttctattcttgttggaaatatctctcgtctaattgtatctaactggtagcgctaatgcaacagATAGCAACGGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGTGGTTATCTCAGCATGAGAAG

Basic information

species Vitis vinifera
transcript Vv02s0025g03530.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03530.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G37850.3 (Glycine max), 3'ss of exon 7
gtgagaaactttgatgatttct--------attcttgtt-ggaaatatctctcgtctaattgtatctaactggtagcgctaatgcaacagATAGCAACGGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGTGGTTATCTCAGCATGAGAAG
|| ||||||  |     || ||         || || || || ||| | |   ||    |   || ||    ||        |   |||||||||||||||||| ||||||||||| || |||   ||||||||||||| ||||| | |||| ||||||||
gtaagaaacgctaccatttccttttaaattgtttttattagggaatttgttcagtgctgtgtgatgtagtcagtgttatctttatgacagATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTGTCAGTATGAGAAG

upper sequence: Vv02s0025g03530.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G01750.1 (Glycine max), 3'ss of exon 7
gtgagaaactttgatgatttctattc--ttgtt-------ggaaatatctctcgtctaattgtatctaactggtagcgctaatgcaacagATAGCAACGGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGTGGTTATCTCAGCATGAGAAG
|| |||||  || |  |||||| |||  |||||       || ||| | |   ||    |   || |||    |        |   |||||||||||||||||| ||||||||||| || |||   ||||||||||||| ||||| | |||| ||||||||
gtaagaaatgttaacaatttcttttcaattgtttttattagggaatttgttcagtgctgtgtgatgtaatcaatgttatctttatgacagATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAATGGTTTTTTCAGTATGAGAAG

upper sequence: Vv02s0025g03530.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G23100.3 (Arabidopsis thaliana), 3'ss of exon 7
gtgagaaactttgatgatttctattcttgttggaaatatct---------ctcgtctaattgt-atctaactggtagcgctaatgcaacagATAGCAACGGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGTGGTTATCTCAGCATGAGAAG
||||||| ||       ||| |    |     ||||  | |          | | ||||   |   || |||  || |   ||| |||||||||||||||||||||||||| ||||| ||||||   || ||||||||||  || | |||||||||||||||
gtgagaagctcgatctctttgtggcataaccagaaacttttattaacgattttgactaaccattgcctcactattatc-taaattcaacagATAGCAACGGCTCTATTTGCGAATTCCCCTTTTACAGAAGGAAAGCCAAACGGATTTCTCAGCATGAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30300777|gb|CB977571.1|CB977571
EST:     CTGAAACTGATATGATCAGGAAGTTTCGTGTTGGACTTGCTTTGCAGCCG                         ATAGCAACAGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGT
genomic: CTGAAACTGATATGATCAGGAAGTTTCGTGTTGGACTTGCTTTGCAGCCGgtgagaaact ... aatgcaacagATAGCAACGGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGT
EST: gi|110428549|gb|EC995024.1|EC995024
EST:     CTGAAACTGATATGATCAGGAAGTTTCGTGTTGGACTTGCTTTGCAGCCG                         ATAGCAACAGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGT
genomic: CTGAAACTGATATGATCAGGAAGTTTCGTGTTGGACTTGCTTTGCAGCCGgtgagaaact ... aatgcaacagATAGCAACGGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGT
EST: gi|30132095|gb|CB917434.1|CB917434
EST:     CTGAAACTGATATGATCAGGAAGTTTCGTGTTGGACTTGCTTTGCAGCCG                         ATAGCAACAGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGT
genomic: CTGAAACTGATATGATCAGGAAGTTTCGTGTTGGACTTGCTTTGCAGCCGgtgagaaact ... aatgcaacagATAGCAACGGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGT
EST: gi|27586164|gb|CB008859.1|CB008859
EST:     CTGAAACTGATATGATCAGGAAGTTTCGTGTTGGACTTGCTTTGCAGCCG                         ATAGCAACAGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGT
genomic: CTGAAACTGATATGATCAGGAAGTTTCGTGTTGGACTTGCTTTGCAGCCGgtgagaaact ... aatgcaacagATAGCAACGGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGT
EST: gi|71885452|gb|DT034507.1|DT034507
EST:     CTGAAACTGATATGATCAGGAAGTTTCGTGTTGGACTTGCTTTGCAGCCG                         ATAGCAACAGCTCTATTTGCAAATTCTCCTTTTGTTG
genomic: CTGAAACTGATATGATCAGGAAGTTTCGTGTTGGACTTGCTTTGCAGCCGgtgagaaact ... aatgcaacagATAGCAACGGCTCTATTTGCAAATTCTCCTTTTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttggaaatatctctcgtctaattgtatctaactggtagcgctaatgcaacagATAGCAACGGCTCTATTTGCAAATTCTCCTTTTGTTGAGGGAAAGCCAAGTGGTTATCTCAGCATGAGAAG
                     taattgtat  TA-rich tract