1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttctttaacaaagaatgtcccatcagtttactgctttcatatggttgagaaattttatttttgtattctgaaaccagcaactaagtgacatgtttttcagGTGGTTCAAACGTGCTGGAGAAGCATTCATTAAAGTACCTTTCTTTGGAGCTGTCTCATACCTTACTTTGGCTGTTTCTCCATTCTGCATAACATTTGCT
species | Vitis vinifera |
transcript | Vv02s0025g03400.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCTTGCAAACTTGTCTGGTTGCTTTGTTGTCGAG GTGGTTCAAACGTGCTGGAGAAGCATTCATTAAAGTACCTTTCTTTGGAGCEST: gi|110685071|gb|EE063074.1|EE063074
genomic: GGCTTGCAAACTTGTCTGGTTGCTTTGTTGTCGAGgtacaattgc ... tgtttttcagGTGGTTCAAACGTGCTGGAGAAGCATTCATTAAAGTACCTTTCTTTGGAGC
EST: GGCTTGCAAACTTGTCTGGTTGCTTTGTTGTCGAG GTGGTTCAAACGTGCTGGAGAAACATTCATTAAAGTACCTTTCTTTGGAGC
genomic: GGCTTGCAAACTTGTCTGGTTGCTTTGTTGTCGAGgtacaattgc ... tgtttttcagGTGGTTCAAACGTGCTGGAGAAGCATTCATTAAAGTACCTTTCTTTGGAGC
tgagaaattttatttttgtattctgaaaccagcaactaagtgacatgtttttcagGTGGTTCAAACGTGCTGGAGAAGCATTCATTAAAGTACCTTTCTTTGGAGCTGTCTCATACCTTACTTTGGCTGTTTCTCCATTCTGCATAACATTTGCT
tgtttttc CT-rich tract
aattttatttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctttaacaaagaatgtcccatcagtttactgctttcatatggttgagaaattttatttttgtattctgaaaccagcaactaagtgacatgtttttcagGTGGTTCAAACGTGCTGGAGAAGCATTCATTAAAGTACCTTTCTTTGGAGCTGTCTCATACCTTACTTTGGCTGTTTCTCCATTCTGCATAACATTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - caaagaa
- - - - - - - - - cccatca
- - - - - - - - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - - - - -tggttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactaa