Sequence
atgc intronic sequence ATGC exonic sequencegtaaatatgatctgtcctgaaccttggtttatttgctttagaaatttgatttggttcagtttccttttttttcattgttaatcaatgtttatgatagcagttgctactcttatgtgccatttccttatattctgctgtgaggaaaaatgggatgaaatttattgtataaatctatccgatgatggctttgaaacagGTTGTTGACAAGCCTGCTCCTGTTAGAATATCATCCTTATTGACTTCTCGACACCTCTCTCAAAGGCGGATTAGGTTGCCTGCAAGGAAATATCATCCTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G33910.1 (Glycine max), 3'ss of exon 8
gtaaatatgatctgtcctgaaccttggtttatttgctttagaaatttgatttggttcagtttccttttttttcattgttaatcaatgtttatgatagcagttgct-actcttatgtgccatttccttatattctgctgtgaggaaaaatgggatgaaatttattgtataaatctatccgatgatggctttgaaacagGTTGTTGACAAGCCTGCTCCTGTTAGAATATCATCCTTATTGACTTCTCGACACCTCTCTCAAAGGCGGATTAGGTTGCCTGCAAGGAAATATCATCCTA
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----------------gtaaatgctctctctcttggttttaacttttgattttgttgatttttatcctggtt--ttgtttaa----actcaagacagaaattatttaatattttgtccatccaaactatcagcaacgtttgagtagtttgagtttcaataaagctaatggcttcaat--atgaca-cctcatttcagGCTCTAGACAAACCTGCTCCTGTTAGAATATCCTCTTTATTGACATCTCGGCATCTCTCTCAAAGACGAATAAGGCTTCCTGTCAGGAAATATCATTCTA
upper sequence: Vv02s0025g03150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G36350.1 (Glycine max), 3'ss of exon 8
gtaaatatgatctgtcctgaaccttggtttatttgctttagaaatttgatttggttcagtttccttttttttcattgttaatcaatgtttatgatagcagttgctactcttatgtgccatttccttatattctgctgtgaggaaaaatgggatgaaatttattgtataaatctatccgatgatggctttgaaacagGTTGTTGACAAGCCTGCTCCTGTTAGAATATCATCCTTATTGACTTCTCGACACCTCTCTCAAAGGCGGATTAGGTTGCCTGCAAGGAAATATCATCCTA
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---------------------------------------------------------------gtaaatgctctttcttggttttaacttttgattttgttgatttttattttgt-ccat--ccaaacaacaaactatcatcaatgtttgagt--agtttga-gtttcaataaagcaaatgact-cctcatttcagGCCCTAGACAAACCTGCTCCTGTTAGAATATCGTCTTTATTGACATCTCGGCATCTCTCACAACGACGAATAAGGCTTCCTGTCAGGAAATATCATTCTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaaaatgggatgaaatttattgtataaatctatccgatgatggctttgaaacagGTTGTTGACAAGCCTGCTCCTGTTAGAATATCATCCTTATTGACTTCTCGACACCTCTCTCAAAGGCGGATTAGGTTGCCTGCAAGGAAATATCATCCTA
atgaaatttattgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatatgatctgtcctgaaccttggtttatttgctttagaaatttgatttggttcagtttccttttttttcattgttaatcaatgtttatgatagcagttgctactcttatgtgccatttccttatattctgctgtgaggaaaaatgggatgaaatttattgtataaatctatccgatgatggctttgaaacagGTTGTTGACAAGCCTGCTCCTGTTAGAATATCATCCTTATTGACTTCTCGACACCTCTCTCAAAGGCGGATTAGGTTGCCTGCAAGGAAATATCATCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA