1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tagccttgatcttcctattggaaaatgtcttttgaactcagaatctctcattgatctcggtgctagaaagaatgtgcttaaatcttttgtgtcatctcagGAAAACCCAAACTGTTTGTTGATAGTTACACCTAAAGGCGGCCACCTAGGGTGGGTTTCAGGGCCTGAAGCTCCCCGTGGAGCTCCTTGGACTGATCCTG
species | Vitis vinifera |
transcript | Vv02s0025g02550.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAG GAAAACCCAAACTGTTCGTTGATAGTTACACCTAAAGGCGGCCACCTAGGGEST: gi|71866513|gb|DT015568.1|DT015568
genomic: CAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAGgtatagaaag ... gtcatctcagGAAAACCCAAACTGTTTGTTGATAGTTACACCTAAAGGCGGCCACCTAGGG
EST: CAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAG GAAAACCCAAACTGTTCGTTGATAGTTACACCTAAAGGCGGCCACCTAGGGEST: gi|110388876|gb|EC953674.1|EC953674
genomic: CAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAGgtatagaaag ... gtcatctcagGAAAACCCAAACTGTTTGTTGATAGTTACACCTAAAGGCGGCCACCTAGGG
EST: CAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAG GAAAACCCAAACTGTTCGTTGATAGTTACACCTAAAGGCGGCCACCTAGGGEST: gi|110373722|gb|EC938021.1|EC938021
genomic: CAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAGgtatagaaag ... gtcatctcagGAAAACCCAAACTGTTTGTTGATAGTTACACCTAAAGGCGGCCACCTAGGG
EST: CAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAG GAAAACCCAAACTGTTCGTTGATAGTTACACCTAAAGGCGGCCACCTAGGGEST: gi|28961880|gb|CB340949.1|CB340949
genomic: CAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAGgtatagaaag ... gtcatctcagGAAAACCCAAACTGTTTGTTGATAGTTACACCTAAAGGCGGCCACCTAGGG
EST: CAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAG GAAAACCCAAACTGTTTGTTGATAGTTACACCTAAAGGCGGCCACCTAGGG
genomic: CAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAGgtatagaaag ... gtcatctcagGAAAACCCAAACTGTTTGTTGATAGTTACACCTAAAGGCGGCCACCTAGGG
tctcattgatctcggtgctagaaagaatgtgcttaaatcttttgtgtcatctcagGAAAACCCAAACTGTTTGTTGATAGTTACACCTAAAGGCGGCCACCTAGGGTGGGTTTCAGGGCCTGAAGCTCCCCGTGGAGCTCCTTGGACTGATCCTG
cattgat putative branch site (score: 4)
tcatctc putative PPT
ttaaatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagccttgatcttcctattggaaaatgtcttttgaactcagaatctctcattgatctcggtgctagaaagaatgtgcttaaatcttttgtgtcatctcagGAAAACCCAAACTGTTTGTTGATAGTTACACCTAAAGGCGGCCACCTAGGGTGGGTTTCAGGGCCTGAAGCTCCCCGTGGAGCTCCTTGGACTGATCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
-agccttg
- - - - - - - - - -ggaaaat
- - - - - - - - - - - - - - - - -gaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagaa