Sequence
atgc intronic sequence ATGC exonic sequencegtaagtagcttttgattttaaatttcccttggtctgtgcatgtggtattgtggactgtggaggaataatgcatactttatattcagCAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G02620.1 (Glycine max), 3'ss of exon 6
gtaagtagcttt--tgattttaaatttcccttgg----tctgtgcatgtggtattgtg-gactgtggaggaataatgcatactttatatt-cagCAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTG
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gtatgtttcattgattctctccattcgttcctaaaatattcatgtatttggaaagaagcaattaccttaatttatttattaattaattttgtagCACTTGTGAGCTTTGGAAAGGTTACTCCTGAACAAAAGCAAGAAGTTGAAAAGTTTGGATTAGCAAT----------------------------
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G36910.1 (Glycine max), 3'ss of exon 7
------gtaagtagcttttgattttaaatttcccttggtctgtgcatgtggtattgtg-gactgtggaggaataatgcatactttatatt-cagCAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTG
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gtatgtttcattgattctctccattcattcctaaaatatccatgtatttggaaagaaacaattaccttagtttatttattaattaattttgtagCACTTGTGAGCTTTGGAAAGGTTACTCCTGAACAAAAGCAAGAAGTTGAAGAGTTTGGGTTAGCAATGTATTCATGGGATGAATTTTTGCAAGTG
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G43470.5 (Glycine max), 3'ss of exon 7
gtaagtagcttttgattttaaatttcccttggtctgtgcatgtggtattgtggactgtggaggaataatgcatactttatattcagCAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTG
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gttagtt-ttgtcgattctctcctttcttt--cctaaaatgcttatgcttcagaaagaagcattcatttttatgtctttgtttcagCAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTG
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G02030.1 (Glycine max), 3'ss of exon 7
gtaagtagcttttgattttaaatttcccttggtctgtgcatgtggtattgtggactgtggaggaataatgcatactttatattcagCAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTG
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gtaagtt-ttgttgattctcttctttcttt--cctaaaatgcttgtgctttagaaagaagcattcatttttatgtctttgttacagCAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAGTTTTGGGTTGGCAATATATTCATGGGATGAATTTTTACTAGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtctgtgcatgtggtattgtggactgtggaggaataatgcatactttatattcagCAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTG
atactttatattca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtagcttttgattttaaatttcccttggtctgtgcatgtggtattgtggactgtggaggaataatgcatactttatattcagCAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA