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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatatgaaattgatcattgaatgatttatgtgtgttcttgaattgaatggtattgtttgatttatggattttctgacgtgggaatggaaaattgaatggtttggatccagaatgaatggagcatgtttgtggaatgtaggctaattgtgttgttttctttgagcagATGTTAATGCAAGGGAAGGGTGGTCGCTATACCTCGGTTTTCCAGCAATATCAGCAGAAGGCTGAGTTTTTCATGTGTTCATGCCTGGGAAAGGGCACTA

Basic information

species Vitis vinifera
transcript Vv02s0025g01380.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G36930.1 (Glycine max), 3'ss of exon 5
gtaatatatgaaattgatcattgaatgatttatgtgtgttcttgaattgaatggtattgtttgatttatggattttctgacgtgggaatggaaaattgaatggtttggatccagaatgaatggagcatgtttgtggaatgtaggctaattgtgttgttttctttgagcagATGTTAATGCAAGGGAAGGGTGGTCGCTATACCTCGGTTTTCCAGCAATATCAGCAGAAGGCTGAGTTTTTCATGTGTTCATGCCTGGGAAAGGGCACTA
                    |   |  ||| ||   |  ||||  |   |||  || ||    | | ||  |    |  || | ||      |  ||   | || || ||  | |   ||     ||  || ||| |   || ||   ||   ||||||  |    |||| |  | |||||||| || | ||| |   || |  | |||||| ||  |||||||||||||||||| | |||||||||||| ||||| ||||||||   | 
-------------------gtaacaccattgattctttatcttataaacaat--tagtgaaaaagtaataaa----caaacataggtt----agcttcttttgtgtgtatt-atatcaaacatcacacattagtgaa---taagcagctttccttgtttcttcctggcagTTCCTGATGCAAGGCAAAGCTGGGCATCATGCTCCAGTTTTCGAGAGATATCAGCAGAAGGCTGAATCTTTCATGTGTTCGTGCCTTGGAAAGGGTGATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33405263|gb|CF210890.1|CF210890
EST:     AGTTCGGGTGGGACGCCAAGTATGCTGGGGTTCAGGTTCTTGTGGCTAAG                         ATGTTAATGCAAGGGAAGGGTGGTCGCTATACCTCGGTTTTCCAGCAATAT
genomic: AGTTCGGGTGGGACGCCAAGTATGCTGGGGTTCAGGTTCTTGTGGCTAAGgtaatatatg ... ctttgagcagATGTTAATGCAAGGGAAGGGTGGTCGCTATACCTCGGTTTTCCAGCAATAT
EST: gi|161717038|gb|FC065898.1|FC065898
EST:     AGTTCGGGTGGGACGCCAAGTATGCTGGGGTTCAGGTTCTTGTGGCTAAG                         ATGTTAATGCAAGGGAAGGGTGGTCGCTATACCTCGGTTTTCCAGCAATAT
genomic: AGTTCGGGTGGGACGCCAAGTATGCTGGGGTTCAGGTTCTTGTGGCTAAGgtaatatatg ... ctttgagcagATGTTAATGCAAGGGAAGGGTGGTCGCTATACCTCGGTTTTCCAGCAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaatggagcatgtttgtggaatgtaggctaattgtgttgttttctttgagcagATGTTAATGCAAGGGAAGGGTGGTCGCTATACCTCGGTTTTCCAGCAATATCAGCAGAAGGCTGAGTTTTTCATGTGTTCATGCCTGGGAAAGGGCACTA
                           ggctaat  putative branch site (score: 3)
                                      ttgttttcttt  putative PPT
                                         ttttcttt  TA-rich tract