Sequence
atgc intronic sequence ATGC exonic sequence...aaaagtacttattcttgatggttttagtaagcatgaactcatctgatgtgctgtattaatgaatatggtctgattgtcatatattcattgttgtgattagGTGTGGCAGATGGAATGGGACATGAGCGGAATGACCTTGGCAACTACTGGAGGAGATGGGATGGTAAGGCTGTGGCAGTCTAACTTGAATGGTGTTTGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01250.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os01g43250.1 (Oryza sativa), 3'ss of exon 7
----------------------------------------------------------------aaaagtacttattcttgatggtt-ttagtaagcatgaactcatctgatgtg---ctgtattaatg-aatatggtctgattgt------catatattcattgttg-----tgattagGTGTGGCAGATGGAATGGGACATGAGCGGAATGACCTTGGCAACTACTGGAGGAGATGGGATGGTAAGGCTGTGGCAGTCTAACTTGAATGGTGTTTGGC
|| || ||| ||| | | || || | | ||| | | || || || ||| | |||||| | || || | || || | | ||||| ||| |||||||||||||| |||| ||||| | ||| | || ||||| ||||| ||||| | ||| |||||| ||||| ||||||| |||||||
gtacaataaacttgtcttgtctttgtgcagtagttattggctgtattacatgggctttctggagaatgtcttttgttcatgaggctccttgagaaattacagtatagttgaagaggactggtcctagtgtaatttttactgattattcggtacacatgcttgtttttcacaccttactagGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATGGCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGC
upper sequence: Vv02s0025g01250.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G057853_T01 (Zea mays), 3'ss of exon 7
----aaaagtacttattcttgatggttttagtaa-gcatgaactcatctgatgtgctgtattaatgaatatggtctgattgtcatatattcattgttgtgattagGTGTGGCAGATGGAATGGGACATGAGCGGAATGACCTTGGCAACTACTGGAGGAGATGGGATGGTAAGGCTGTGGCAGTCTAACTTGAATGGTGTTTGGC
| ||| |||| |||| | ||| | | | || | | |||| ||| | | || ||| | || | || |||| | | ||| ||||||||||| |||||||||||||| |||| ||||| | ||| | || ||||||||||| ||||| | ||| |||||| |||| ||| |||| |||||||
acgaacaaggccttagtcttttttatttgaacactagaccgcatctttttgtgtg-tgtgtgattgtttatacttgcat---cttacattc-tgaatctgactagGTGTGGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCAACCGGAGGAGATGGCATGGTTAAGCTATGGCAGGCTAATTTGGATGGAGTTTGGC
upper sequence: Vv02s0025g01250.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G43410.1 (Glycine max), 3'ss of exon 7
--------------------------------------------aaaagtacttattcttgatggttttagtaagca--tgaactca---tctgatgtgctgtattaatgaatatggtctgattgtcatatattcattgttg-tgattagGTGTGGCAGATGGAATGGGACATGAGCGGAATGACCTTGGCAACTACTGGAGGAGATGGGATGGTAAGGCTGTGGCAGTCTAACTTGAATGGTGTTTGGC
| | | | ||| | | | |||||| | | |||| | ||| | | | | | | || | || | || || |||||||||||| ||||| ||||| ||||| |||||||| ||||| ||||| || ||||| ||||| | | |||||||| || | ||||| |||||||
gtatatgattttagatttgcctcttcatatgttcacgtctacttttcaatgtctttcagagatcatacgtatggatatttgaacttagcttttgattgattatatgacaaggtgttgctt-actggagtctaccgttaaatgctgtttagGTGTGGCAAATGGAGTGGGATATGAGTGGAATGACTTTGGCTACTACAGGTCATGATGGAATGGTCCGATTATGGCAGTCGAATCTCAATGGCGTTTGGC
upper sequence: Vv02s0025g01250.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G02070.1 (Glycine max), 3'ss of exon 7
----------------------------------------------aaaagtacttattcttgatggttttagtaagcat--gaactca---tctgatgtgctgtattaatgaatatggtctgattgtcatatattcattgttg-----tgattagGTGTGGCAGATGGAATGGGACATGAGCGGAATGACCTTGGCAACTACTGGAGGAGATGGGATGGTAAGGCTGTGGCAGTCTAACTTGAATGGTGTTTGGC
|| | || | ||| | | ||||| | | ||||| | ||| | | | | | || || | || ||| | |||||||||||| ||||| ||||| ||||| |||||||| ||||| ||||| || ||||| ||||| | |||||||||| || | |||||||||||||
gtatatgattttagatttgcctctttatatgttcaggcctacttttcaatttgtttttcagagatcatacgtacggatcttggaacttagcttttgatggattatatgacaaggtgttgcttacttactggatgtccaccgttaaatgttttttagGTGTGGCAAATGGAGTGGGATATGAGTGGAATGACTTTGGCTACTACAGGTCATGATGGAATGGTCCGATTGTGGCAGTCCAATCTCAATGGTGTTTGGC
upper sequence: Vv02s0025g01250.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ26027 (Selaginella moellendorffii), 3'ss of exon 7
aaaagtacttattcttgatggttttagtaagcatgaactcatctgatgtgctgtattaatgaatatggtctgattgtcatatattcattgttgtgattagGTGTGGCAGATGGAATGGGACATGAGCGGAATGACCTTGGCAACTACTGGAGGAGATGGGATGGTAAGGCTGTGGCAGTCTAACTTGAATGGTGTTTGGC
||| | ||| | | | || | | | | | | | || || || |||||||||||| || || |||||||||||||| ||||| |||||| | || ||||| | || ||||||||||| || || |||| | |||
--------------------------------gtgagc--atccaaagcttta----aaaaagtgttttttttccaagaaaaatctatcattt---ttagGTGTGGCAAATCGATTGGGACATGAGCGGCATGACATTGGCATCGTCTTCCTCGGATGGAACCGTGAGGCTGTGGCAAGCTGGTTTAGATGGAGCGTGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtgctgtattaatgaatatggtctgattgtcatatattcattgttgtgattagGTGTGGCAGATGGAATGGGACATGAGCGGAATGACCTTGGCAACTACTGGAGGAGATGGGATGGTAAGGCTGTGGCAGTCTAACTTGAATGGTGTTTGGC
tgtattaatgaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaagtacttattcttgatggttttagtaagcatgaactcatctgatgtgctgtattaatgaatatggtctgattgtcatatattcattgttgtgattagGTGTGGCAGATGGAATGGGACATGAGCGGAATGACCTTGGCAACTACTGGAGGAGATGGGATGGTAAGGCTGTGGCAGTCTAACTTGAATGGTGTTTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
aaaagta
- - - - - - -cttgatg
- - - - - - - - - - - - - - - gcatgaa
- - - - - - - - - - - - - - - - - - - - -tctgatg
- - - - - - - - - - - - - - - - - - - - - - - - tgctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg