Sequence
atgc intronic sequence ATGC exonic sequencegttaagtgcatcataggatcaagttgttatttctaaattagaaaatggtaaaaatccaattttcaaaagtagttaccaaacaaaccctaacatatatatatatatattttgttgttggtttaatagGTGGACTACATACTAGGTAACAACCCCAAGAAGATGTCATACATGTTGGGTTACGGAAGCAAATATCCAACGCAATTACACCATAGGGGTGCATCCATCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g00430.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G02350.1 (Glycine max), 3'ss of exon 7
gttaagtgcatcataggatcaagttgttatttctaaattagaaaatggtaaaaatccaattttcaaaagtagttaccaaacaaaccctaacatatatatatatatattttgttgttggtttaatagGTGGACTACATACTAGGTAACAACCCCAAGAAGATGTCATACATGTTGGGTTACGGAAGCAAATATCCAACGCAATTACACCATAGGGGTGCATCCATCC
| | | | ||| | || || ||| | | || || ||| || || |||| || || || ||| | | ||||| | ||| | ||| | ||||||||||||||||||| | ||| || | ||||||||| |||||| |||| | || || ||||| |||| ||||||||| || || || |||||||||
---------tttaaaagctcacatagtagttgctagaattgacaa-aataacaaaaaaaggttca----tacttgtca------ttctattac-----tggatataatgtgtgggtggcatg-cagGTGGACTACATACTAGGAAGCAATCCGATGAAGATGTCTTACATGGTGGGATTTGGCAGTAAATACCCAAAGCAATTACATCACAGAGGCTCATCCATCC
upper sequence: Vv02s0025g00430.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S100_137V6.1 (Physcomitrella patens), 3'ss of exon 7
--------------------------gttaagtg-catcataggatcaagttgttatttctaaattagaaaatggtaaaaatccaattttcaaaagtagtta-----ccaaacaaaccctaacatatatatatatatatt-ttgttgttggtttaatagGTGGACTACATACTAGGTAACAACCCCAAGAAGATGTCATACATGTTGGGTTACGGAAGCAAATATCCAACGCAATTACACCATAGGGGTGCATCCATCC
|| | | | | || | | | | ||| || || | ||| |||| | || | | ||| | | || | | | | || ||||||||| ||| |||| || ||||| || || ||||||||||| |||||||| |||||| |||||| |||||||||||||||||| ||| ||||| ||| | || | |
gttagagttcaacaccatccttcgcaaccaaacaacccctcaaaaatctcttcacctgattgtgctccagaattaaaagaaac-aatattcagtcattgtcaaacatctaaatacaaccatgggtggtcgtcactgtgttgttgttgttgtattatcagGTAGATTACATCCTCGGAAACAACCCCAAAAAGATGTCCTACATGGTGGGTTTCGGAAGCAAATATCCAACACAACCTCACCACCGGGCGTCGTCGTTGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30137506|gb|CB922844.1|CB922844EST: GCTCTGCACATTTCCCCACCTCTCAAATCAGAGCCTTTGCAAAATCACAG GTGGACTACATACTAGGTAACAACCCCAAGAAGATGTCATACATGTTGGGT
genomic: GCTCTGCACATTTCCCCACCTCTCAAATCAGAGCCTTTGCAAAATCACAGgttaagtgca ... ggtttaatagGTGGACTACATACTAGGTAACAACCCCAAGAAGATGTCATACATGTTGGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttaccaaacaaaccctaacatatatatatatatattttgttgttggtttaatagGTGGACTACATACTAGGTAACAACCCCAAGAAGATGTCATACATGTTGGGTTACGGAAGCAAATATCCAACGCAATTACACCATAGGGGTGCATCCATCC
ccctaac putative branch site (score: 2)
taacatatatatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaagtgcatcataggatcaagttgttatttctaaattagaaaatggtaaaaatccaattttcaaaagtagttaccaaacaaaccctaacatatatatatatatattttgttgttggtttaatagGTGGACTACATACTAGGTAACAACCCCAAGAAGATGTCATACATGTTGGGTTACGGAAGCAAATATCCAACGCAATTACACCATAGGGGTGCATCCATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA