Sequence
atgc intronic sequence ATGC exonic sequence...tacagttttgtttatcacatatttatttcaaatggcttgttttaggctgtgatgttggttgatttgataacttagtctctgataatgctaccttttacagTGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTTGACGAGGTTTAACTCAGAAAAGACCGTCAGTTTTGTGCCACCAGATGGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g00910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os02g46510.1 (Oryza sativa), 3'ss of exon 7
----------------------------------tacagttttgtttatcacatatttatttcaaatggcttgttt--taggc-tgtgatgttggttgatttga-taacttagtctctgat-aatgctacctttt-----acagTGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTTGACGAGGTTTAACTCAGAAAAGACCGTCAGTTTTGTGCCACCAGATGGT
| | || | | | | | | || || | || | | || | || || | ||| | | | || ||| | | || | |||| |||| || || |||||||||||||||||||| || ||||||||||| || || ||||| || ||||||||||||||||| ||||| |||||||| ||||| |||
gtatcactttatcaataattagtacatgaagaaaaaaaattgagcatctggtttttctgattagtatagtttatatggtatgtacacaatctttactactttaactgaattgtctgctggtcggttctcctttttcctcaacagCGGAAAGACCATTGAGCTTGATGATGTCACATTCCACCAGTGTGTCAACTTGACAAGATTTAACTCAGAAAAGACAGTCAGCTTTGTGCCGCCAGACGGT
upper sequence: Vv02s0012g00910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G331032_T01 (Zea mays), 3'ss of exon 7
--------tacagttttgtttatca-catatttatttcaaatggcttgttttaggctgtgatgttggttgatttgataacttagtctctgataatgctaccttttacagTGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTTGACGAGGTTTAACTCAGAAAAGACCGTCAGTTTTGTGCCACCAGATGGT
||||||| | || | | | || ||| | ||| |||| ||| || || | | | || | ||| | | | | | | |||||||| || || || || ||||||||||| || ||||||||||| || || || || || ||||||||||||||||| |||||||| |||||||| || |||
cagatcgtggtagttttgctcattaatacaatttttttgga--acttttttt----tgtcatctttgctaaatttgttactgattgt---gtcttctcttgctctacagTGGGAAGACTATAGAACTTGATGATGTCACATTCCACCAGTGTGTCAACTTAACAAGATTTAACTCAGAAAAGACAGTCAGTTTCGTGCCACCTGACGGT
upper sequence: Vv02s0012g00910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G04600.1 (Glycine max), 3'ss of exon 7
tacagttttgtttatcacatatttatttcaaa-tggcttgttttaggctgtgatgttg-gttgatttgataacttagtctctgataatgctaccttttacagTGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTTGACGAGGTTTAACTCAGAAAAGACCGTCAGTTTTGTGCCACCAGATGGT
| |||| | || || |||| | | || | ||| || | || || || | | || | ||| || ||| |||| |||||| ||||| ||||||||||||||||| |||||||| || || ||||||||||| ||||| |||||||| ||||| || |||||||||||||| ||||||
tttggtttgttgtactgggaggatagttcatccttatgttttatttgctctggtattatattcatattgttttctattgtctacaaaatcta--ttttgcagTGGTAAAACTATTGAGCTTGATGATGTCACTTTCCATCAATGTGTAAATTTGACAAGGTTCAACTCAGAGAAGACAGTTAGTTTTGTGCCACCTGATGGT
upper sequence: Vv02s0012g00910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G40700.1 (Glycine max), 3'ss of exon 7
--tacagttttgtt-tatcac-atatttatttcaaatggcttgttttaggctgtgatgttggttgatttgataacttagtctctgataatgctaccttttacagTGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTTGACGAGGTTTAACTCAGAAAAGACCGTCAGTTTTGTGCCACCAGATGGT
| |||||| || | ||| || | | ||| || ||| ||| || | || ||| | || | | ||| || ||| |||| |||||| ||||| ||||||||||||||||| |||||||| || || ||||||||||| |||||||||||||| || || || |||||||||||||| |||||
ctgtttgctttgttgtacgaggatagttcatccttatgttttattt-gctctgctataatagtaacattgttttct-attgtctacaaaatcta--ttttgcagTGGTAAAACTATTGAGCTTGATGATGTCACTTTCCATCAATGTGTAAATTTGACAAGGTTTAACTCAGAGAAAACAGTTAGTTTTGTGCCACCTGATGGA
upper sequence: Vv02s0012g00910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G46630.1 (Arabidopsis thaliana), 3'ss of exon 7
tacagttttgtttatcacatatttatttcaaatggcttgttttaggctgtgatgttggttgatttgataacttagtctctgataatgctaccttttacagTGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTTGACGAGGTTTAACTCAGAAAAGACCGTCAGTTTTGTGCCACCAGATGGT
||| || ||| ||| | | ||| || | | |||| | || | |||||| ||||||||||||||||||||||| || || |||||||| || || |||| || || ||||| || ||||| || |||||||| ||||| |||||
------------------gtatacgttgttaatacattg-----aacatcagtagccactgacttttctttgtgctaactgac--tctcgttttgtgcagTGGTAAAACCATTGAGCTTGATGATGTCACATTTCACCAGTGTGTGAACCTGACCAGATTCAACTCCGAGAAGACTGTTAGTTTTGTACCACCGGATGGA
upper sequence: Vv02s0012g00910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S197_28V6.1 (Physcomitrella patens), 3'ss of exon 7
------------------------------------------------------------------------tacagttttgtttatcacatattt-atttcaaatggcttgt--tttaggc---tgtgatgttggttgatttgataacttagtctctgataatgctacctt--ttacagTGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTTGACGAGGTTTAACTCAGAAAAGACCGTCAGTTTTGTGCCACCAGATGGT
| |||| |||| || ||| | | | | |||| || | | | || ||| | | || | |||| | | | | || | ||||||| ||||| |||||||||||||||||||| |||||||| || || ||| | || || || | | || ||||| ||||||||||| ||||| |||||
gttgaatgcgcatccacactcttgtgatggcttcgtttaacaatgttgccctcaagtgttttttatttttatttttattttatttactttattttttactctcattctcttgcagcttcgacatatttgggtttgaaaagtgttttacactgtgctcttgtgactcctctttcatgacagTGGGAAAACAATTGAGCTTGATGATGTTACATTCCACCAATGTGTCAATCTCACAAGATTCACTGCTGAGAAGACAGTCAGTTTTGTTCCACCCGATGGA
upper sequence: Vv02s0012g00910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S54_156V6.1 (Physcomitrella patens), 3'ss of exon 7
------------------------------------------------tacagttttgtttatcacatatttatttcaaatggcttgttttag--gctgtgatgttggttgat--ttgataacttagtctctgataatgctaccttttacagTGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTTGACGAGGTTTAACTCAGAAAAGACCGTCAGTTTTGTGCCACCAGATGGT
| || || | | || || |||| | || ||| | | | | |||| | | |||| | || || | | | |||||||||| || |||||||||||||| || || ||||||||||| || ||| | ||||| || || | || ||||| |||||||| || ||||| |||||
gttgaatgcacattcctggggcaccctgattttgctatggcttcattgtgcaaagtt-tccccgagatgcttctttccccttgcagatttgaaatgtttgaaaattggaaggtacttgacattccgtcctgatgtatttccttttacgacagTGGCAAGACAATTGAGCTTGATGACGTCACATTCCACCAGTGTGTGAATCTTACGAGATTCAATGCCGAGAAGACAGTCAGTTTCGTTCCACCGGATGGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29782813|gb|CB348455.2|CB348455EST: AAAATTGGCCTTGAGAAAGAGTCCCAACTTAAATCCCGTCCTGCTAAAGG TGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTT
genomic: AAAATTGGCCTTGAGAAAGAGTCCCAACTTAAATCCCGTCCTGCTAAAAGgtaacttttt ... ccttttacagTGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctgtgatgttggttgatttgataacttagtctctgataatgctaccttttacagTGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTTGACGAGGTTTAACTCAGAAAAGACCGTCAGTTTTGTGCCACCAGATGGT
ctacctttt CT-rich tract
atttgataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacagttttgtttatcacatatttatttcaaatggcttgttttaggctgtgatgttggttgatttgataacttagtctctgataatgctaccttttacagTGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTTGACGAGGTTTAACTCAGAAAAGACCGTCAGTTTTGTGCCACCAGATGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - tgttggt