Sequence
atgc intronic sequence ATGC exonic sequencegtaagtattttgggttttatcccattatgttctttagaatgtaatataactttggttattaatgatataaaaaggctgaccggatttgttttgcccccccagTCACAACCAGTGGAAGTCAATGTAGTCAGCCATCCTATCCAGAGGTATGCGGTTTGGTTTGGAGGCTCTGTACTTGCATCAACACCCGAATTTTTTGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0137g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os02g38340.1 (Oryza sativa), 3'ss of exon 8
gtaagtattttgggttttatcccattatgttctttagaatgtaatataactttggtta-----------tta--atgatataaaaaggctga----ccggatttgttttgccc-ccccagTCACAACCAGTGGAAGTCAATGTAGTCAGCCATCCTATCCAGAGGTATGCGGTTTGGTTTGGAGGCTCTGTACTTGCATCAACACCCGAATTTTTTGCG
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gtacaaacttttcatgtttgctc-tggctctctcctgattgcagaagaacactggccaaaccagaaactttattgtgatattggaacttggaagctacagctacattctgtttatttcagGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCTGTCTGGTTTGGTGGTTCTGTGCTTGCCTCTACCGCTGAATTCTACGAG
upper sequence: Vv01s0137g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G13780.1 (Glycine max), 3'ss of exon 7
--gtaagtattttg-ggttttatcccattatgttctttagaatgtaatataactttggttattaatgatataaaaaggctgaccggatttgttttgcccccccagTCACAACCAGTGGAAGTCAATGTAGTCAGCCATCCTATCCAGAGGTATGCGGTTTGGTTTGGAGGCTCTGTACTTGCATCAACACCCGAATTTTTTGCG
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ttgtcaccttgatatagttctggcaggttgtactgctatacatatt-tattgctttggtcttgcat----ttacttcttctacttcattaatttggtgcctacagTCACAGCCAGTGGAGGTAAATGTACTCAGCCATCCAATCCAAAGATTTGCAGTTTGGTTTGGAGGATCAGTACTTGCATCAACACCTGAATTTTTTACG
upper sequence: Vv01s0137g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G13810.1 (Glycine max), 3'ss of exon 7
gtaagtattttgggttttatcccattatgttctttagaatgtaatataactttggttattaatgatataaaaaggc--tgaccggatt-tgttttgcccccccagTCACAACCAGTGGAAGTCAATGTAGTCAGCCATCCTATCCAGAGGTATGCGGTTTGGTTTGGAGGCTCTGTACTTGCATCAACACCCGAATTTTTTGCG
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----tagtgatgtgttggttgttagttggttttatggaagggcagactgctatatat-ttattgctttggcctggcatttacttttttatatttggagtctgcagTCGCAGCCAGTGGAGGTAAATGTACTCAGCAATCCAATCCAGAGATTTGCAGTTTGGTTTGGAGGATCAGTGCTTGCATCAACACCTGAATTTTTTACG
upper sequence: Vv01s0137g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G30630.1 (Glycine max), 3'ss of exon 7
gtaagtattttgggttttatcccattatgttctttagaatgtaatataactttggttattaatgatataaaaaggctgaccggatttgttttgcccccccagTCACAACCAGTGGAAGTCAATGTAGTCAGCCATCCTATCCAGAGGTATGCGGTTTGGTTTGGAGGCTCTGTACTTGCATCAACACCCGAATTTTTTGCG
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-ttagtgatgtgttggttgtta-attgtattttggaaggtctgactgctatatatttattgctttggcctggcatttacttttttatatttggaacctacagTCGCAGCCAGTGGAGGTAAATGTACTCAGCAATCCAATCCAGAGATATGCAGTTTGGTTTGGAGGATCAGTGCTTGCGTCAACACCTGATTTTTTTACG
upper sequence: Vv01s0137g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G13180.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtattttgggttttatcccattatgttctttagaatgtaatataactttggttattaatgatataaaaaggctgaccggatttgttttgcccccccagTCACAACCAGTGGAAGTCAATGTAGTCAGCCATCCTATCCAGAGGTATGCGGTTTGGTTTGGAGGCTCTGTACTTGCATCAACACCCGAATTTTTTGCG
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gtaagaaaattg----------tatgatattctggaaaataaaagtgataaccagtt-ttcttaatctgaggtgat-------atttattt-ataaccacagTCTCAACCGGTGGAGGTTAATGTCGTGAGCCATCCTGTCCAGAGGTTTGCAGTTTGGTTTGGAGGCTCTGTGCTTTCATCAACTCCTGAGTTTTTCGCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactttggttattaatgatataaaaaggctgaccggatttgttttgcccccccagTCACAACCAGTGGAAGTCAATGTAGTCAGCCATCCTATCCAGAGGTATGCGGTTTGGTTTGGAGGCTCTGTACTTGCATCAACACCCGAATTTTTTGCG
tttgttttgccccccc CT-rich tract
tggttattaatgatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtattttgggttttatcccattatgttctttagaatgtaatataactttggttattaatgatataaaaaggctgaccggatttgttttgcccccccagTCACAACCAGTGGAAGTCAATGTAGTCAGCCATCCTATCCAGAGGTATGCGGTTTGGTTTGGAGGCTCTGTACTTGCATCAACACCCGAATTTTTTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG