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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccgaatagaacaataagaatagggtagctacctctctagcatatttccctcttattttattattatttattcatttattttgtgtgtattgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGTGAAAACAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGT

Basic information

species Vitis vinifera
transcript Vv01s0127g00720.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30322888|gb|CD006150.1|CD006150
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|34547687|gb|CF515919.1|CF515919
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|110378531|gb|EC943668.1|EC943668
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|110410367|gb|EC976048.1|EC976048
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|110367537|gb|EC931474.1|EC931474
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|32271842|gb|CD721001.1|CD721001
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|34548812|gb|CF517044.1|CF517044
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|225387936|gb|GO307567.1|GO307567
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|71859278|gb|DT008333.1|DT008333
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|161715637|gb|FC066795.1|FC066795
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|32248004|gb|CD713823.1|CD713823
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|30328347|gb|CD011609.1|CD011609
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|34548905|gb|CF517137.1|CF517137
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|30128124|gb|CB913463.1|CB913463
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
EST: gi|110387082|gb|EC951724.1|EC951724
EST:     GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAG                         TGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT
genomic: GGAGGGATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCTAGgtaagtcttt ... tgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccctcttattttattattatttattcatttattttgtgtgtattgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGTGAAAACAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGT
       ttattttattattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tccgaatagaacaataagaatagggtagctacctctctagcatatttccctcttattttattattatttattcatttattttgtgtgtattgaacttcagTGACTTCATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGTGAAAACAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - aatagaa
- - - - - - -ataagaa
- - - - - - - - - - - - - - ctacctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt