Sequence
atgc intronic sequence ATGC exonic sequencegtgatttaaatagttgttgatatatccttggttcattcttattttagtaatgtgttcattattcgcaaagaaaattgaagcaatatcatgaacttattctcctttgctttttgcttataactatatagcagccccttttttcactgccttcagatttgaacacaattccatgtcctctcttctagGTGGTAAGAGCATTAGACAGTGAAGGCGAATCGACTGATCTCACCAATGGAGTGAAATATGGTCAGAGCACCATTTATGATTCTGGGCAGTACAATCAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0127g00670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G04010.1 (Glycine max), 3'ss of exon 8
gtgatttaaatagttgttgatatatccttggttcattcttattttagtaatgtgttcattattcgcaaagaaaattgaagcaatatcatgaacttattctcctttgctttttgcttataactatatagcagccccttttttcactgccttcagatttgaacacaattc--catgtcctctcttctagGTGGTAAGAGCATTAGACAGTGAAGGCGAATCGACTGATCTCACCAATGGAGTGAAATATGGTCAGAGCACCATTTATGATTCTGGGCAGTACAATCAGG
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-----------------------------------------------------------------------------------tatttactctgtatgattatatgcatttt--taacatttctatcttaattaattctt--aactcgttcagatcatttggtaatccgtcccttggttttaatcagGTGGCTAGATCCTTAGATAGTGGTGATCAACAATATGATCTATCTAATGGGGTGAAATATGGTCAGAGCACTATTTATGATTCTGGCCAGTATAATGAAG
upper sequence: Vv01s0127g00670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G03690.1 (Glycine max), 3'ss of exon 8
gtgatttaaatagttgttgatatatccttggttcattcttattttagtaatgtgttcattattcgcaaagaaaattgaagcaatatcatgaacttattctcctttgctttttgcttataactatatagcagccccttttttcactgccttcagat--ttgaacacaattccatgtcctctcttctagGTGGTAAGAGCATTAGACAGTGAAGGCGAATCGACTGATCTCACCAATGGAGTGAAATATGGTCAGAGCACCATTTATGATTCTGGGCAGTACAATCAGG
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-------------------------------------gtgataacaataata-gacaattatttt--gtgttcatcaaaacatt-tcatctacctatttatgatta-tctgcatttgtaac---atttctatcttaattcttaactcattcaaatcatttgctaatatgtcccttggtttttatcagGTGGCTAGATCCTTAGATAGCGGCAACCAACTATATGATCTATCAAATGGGGTGAAATATGGCCAGAGCACTGTTTATGATTCTGGCCAGTATAATGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gccccttttttcactgccttcagatttgaacacaattccatgtcctctcttctagGTGGTAAGAGCATTAGACAGTGAAGGCGAATCGACTGATCTCACCAATGGAGTGAAATATGGTCAGAGCACCATTTATGATTCTGGGCAGTACAATCAGG
ttccatgtcctctctt CT-rich tract
ttttttca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgatttaaatagttgttgatatatccttggttcattcttattttagtaatgtgttcattattcgcaaagaaaattgaagcaatatcatgaacttattctcctttgctttttgcttataactatatagcagccccttttttcactgccttcagatttgaacacaattccatgtcctctcttctagGTGGTAAGAGCATTAGACAGTGAAGGCGAATCGACTGATCTCACCAATGGAGTGAAATATGGTCAGAGCACCATTTATGATTCTGGGCAGTACAATCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA