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gtatatctataatcttcaagaaattcatattattttatagttgctaaacaactttatgatctgttataatttgccatcaactctaaatttttcatttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAAGCCTTATCCTTTGGATATGAGAGGCGAGCTGGACGATACTGCTGCTTT
species | Vitis vinifera |
transcript | Vv01s0127g00260.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAEST: gi|71882514|gb|DT031569.1|DT031569
genomic: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
EST: TTGCTCTATTTGTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAEST: gi|111125104|gb|EE253722.1|EE253722
genomic: TTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
EST: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAEST: gi|351054175|gb|FQ450257.1|FQ450257
genomic: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
EST: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAEST: gi|110731355|gb|EE105692.1|EE105692
genomic: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
EST: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAEST: gi|110730143|gb|EE106883.1|EE106883
genomic: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
EST: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGGAEST: gi|349820930|gb|FQ408638.1|FQ408638
genomic: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
EST: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAEST: gi|351035742|gb|FQ463587.1|FQ463587
genomic: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
EST: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAEST: gi|349822202|gb|FQ412466.1|FQ412466
genomic: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
EST: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAEST: gi|111125102|gb|EE253720.1|EE253720
genomic: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
EST: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAEST: gi|71882170|gb|DT031225.1|DT031225
genomic: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
EST: TTGCTCTATTTGTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAEST: gi|161718453|gb|FC065040.1|FC065040
genomic: TTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
EST: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAEST: gi|351044803|gb|FQ449057.1|FQ449057
genomic: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
EST: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAEST: gi|161714091|gb|FC064386.1|FC064386
genomic: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
EST: CAAGGGAAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTCTATTTGTAG ATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
genomic: CAAGGGGAAAATTGAGGAGTTTATCAAAGTGGTTTTTGCTTTATTTTTAGgtatatctat ... catttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAA
acaactttatgatctgttataatttgccatcaactctaaatttttcatttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAAGCCTTATCCTTTGGATATGAGAGGCGAGCTGGACGATACTGCTGCTTT
ctctaaa putative branch site (score: 3)
tttttcattt CT-rich tract
tctaaatttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatctataatcttcaagaaattcatattattttatagttgctaaacaactttatgatctgttataatttgccatcaactctaaatttttcatttgccagATCTGGACTTCACTTTCCTAGAGATGAATCCTTTTACATTGGTTGATGGAAAGCCTTATCCTTTGGATATGAGAGGCGAGCTGGACGATACTGCTGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT