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...ttcaataaggatctagcatgatttattgcattttattataatactatgtgctatcatggaatttctgcttttttaaattattaacagacttgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTG
species | Vitis vinifera |
transcript | Vv01s0026g01700.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTEST: gi|110693432|gb|EE069656.1|EE069656
genomic: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACT
EST: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCANATTGGCTTTGACTTGGATTCAEST: gi|161717886|gb|FC065984.1|FC065984
genomic: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
EST: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCAEST: gi|110379389|gb|EC944580.1|EC944580
genomic: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
EST: CTCGAAGTTAATTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCAEST: gi|30137104|gb|CB922442.1|CB922442
genomic: CTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
EST: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAG GTTACTGAAGCTCGEST: gi|46910317|gb|CN545692.1|CN545692
genomic: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCG
EST: GAAGTTAATTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCAEST: gi|71884005|gb|DT033060.1|DT033060
genomic: GAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
EST: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCAEST: gi|71884658|gb|DT033713.1|DT033713
genomic: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
EST: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCAEST: gi|161718575|gb|FC069322.1|FC069322
genomic: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
EST: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCAEST: gi|161719703|gb|FC069425.1|FC069425
genomic: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
EST: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCAEST: gi|110722964|gb|EE099738.1|EE099738
genomic: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
EST: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCAEST: gi|110396076|gb|EC961751.1|EC961751
genomic: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
EST: TGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAAAGTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCAEST: gi|110361687|gb|EC925180.1|EC925180
genomic: TGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTT-AATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
EST: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCAEST: gi|22011799|gb|BQ796833.1|BQ796833
genomic: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
EST: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCAEST: gi|110713393|gb|EE089276.1|EE089276
genomic: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
EST: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAN GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCAEST: gi|161720924|gb|FC070664.1|FC070664
genomic: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
EST: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAG GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
genomic: ATGGAAAACTGGATGAGCAGAAGGAGATCTCGAAGTTAATTAAGAATGAGgtacatccaa ... tgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCA
atgtgctatcatggaatttctgcttttttaaattattaacagacttgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTG
tattaac putative branch site (score: 1)
aatttctgctttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaataaggatctagcatgatttattgcattttattataatactatgtgctatcatggaatttctgcttttttaaattattaacagacttgtgaaacagGTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - ataagga
- - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - - - - - tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - catggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taacaga