1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgcacatcaaagaagtagaattctgttatgcatgttgctaatatgggagaaatgaagatctaaaatttttgtgaccttgattttgtttttcctcctgtagTTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCCAGATTACTTCAATGTCAAAATTTAGATCCAGAGCAAATAGCAAGCGAGC
species | Vitis vinifera |
transcript | Vv01s0011g06630.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAG TTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCCEST: gi|110697326|gb|EE074214.1|EE074214
genomic: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAGgtacactttc ... cctcctgtagTTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCC
EST: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAG TTTCTCAAGTGGTGGTGAGGATGGATACGTAAGACTACATCATTTCGACCCEST: gi|110380898|gb|EC946200.1|EC946200
genomic: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAGgtacactttc ... cctcctgtagTTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCC
EST: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAG TTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCCEST: gi|110411322|gb|EC977030.1|EC977030
genomic: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAGgtacactttc ... cctcctgtagTTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCC
EST: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAG TTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCCEST: gi|110369193|gb|EC933345.1|EC933345
genomic: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAGgtacactttc ... cctcctgtagTTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCC
EST: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAG TTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCCEST: gi|110420350|gb|EC986622.1|EC986622
genomic: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAGgtacactttc ... cctcctgtagTTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCC
EST: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAG TTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCCEST: gi|349810075|gb|FQ401521.1|FQ401521
genomic: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAGgtacactttc ... cctcctgtagTTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCC
EST: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAGGAG TTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCC
genomic: GGGCACTTTGGACCTATAAATGCTTTAGCATTCAACCCTGATGGAAAGAGgtacactttc ... cctcctgtagTTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCC
ggagaaatgaagatctaaaatttttgtgaccttgattttgtttttcctcctgtagTTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCCAGATTACTTCAATGTCAAAATTTAGATCCAGAGCAAATAGCAAGCGAGC
ccttgattttgttttt CT-rich tract
aagatctaaaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcacatcaaagaagtagaattctgttatgcatgttgctaatatgggagaaatgaagatctaaaatttttgtgaccttgattttgtttttcctcctgtagTTTCTCAAGTGGCGGTGAGGATGGATACGTAAGACTACATCATTTCGACCCAGATTACTTCAATGTCAAAATTTAGATCCAGAGCAAATAGCAAGCGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - -caaagaa
- - - - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - -ggagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaccttg