1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttatcactcaccttctatgctgctgttcaaacccctgttatacattgattttctctaaacaattcatgcaatcttctaatcgataacatctcgtttgcagGTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGGTCATGATCATGATATGGAGAACTCCACCAGTCCTGGTTGCCCTCTACTT
species | Vitis vinifera |
transcript | Vv01s0011g06560.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTTGTGATACTAATTTTTGGAGATGGAAAAGATATCGGAAATGCTTTTG GTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGGEST: gi|351026848|gb|FQ436501.1|FQ436501
genomic: TCTTGTGATACTAATTTTTGGGGATGGAAAAGATATCGGAAATGCTTTTGgtatgcaagc ... tcgtttgcagGTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGG
EST: TCTTGTGATACTAATTTTTGGAGATGGAAAAGATATCGGAAATGCTTTTG GTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGGEST: gi|349814037|gb|FQ414271.1|FQ414271
genomic: TCTTGTGATACTAATTTTTGGGGATGGAAAAGATATCGGAAATGCTTTTGgtatgcaagc ... tcgtttgcagGTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGG
EST: TCTTGTGATACTAATTTTTGGAGATGGAAAAGATATCGGAAATGCTTTTG GTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGGEST: gi|349819720|gb|FQ402657.1|FQ402657
genomic: TCTTGTGATACTAATTTTTGGGGATGGAAAAGATATCGGAAATGCTTTTGgtatgcaagc ... tcgtttgcagGTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGG
EST: TCTTGTGATACTAATTTTTGGAGATGGAAAAGATATCGGAAATGCTTTTG GTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGGEST: gi|37184195|gb|CF603549.1|CF603549
genomic: TCTTGTGATACTAATTTTTGGGGATGGAAAAGATATCGGAAATGCTTTTGgtatgcaagc ... tcgtttgcagGTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGG
EST: TCTTGTGATACTAATTTTTGGAGATGGAAAAGATATCGGAAATGCTTTTG GTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGG
genomic: TCTTGTGATACTAATTTTTGGGGATGGAAAAGATATCGGAAATGCTTTTGgtatgcaagc ... tcgtttgcagGTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGG
tgattttctctaaacaattcatgcaatcttctaatcgataacatctcgtttgcagGTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGGTCATGATCATGATATGGAGAACTCCACCAGTCCTGGTTGCCCTCTACTT
tctcgttt CT-rich tract
taaacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatcactcaccttctatgctgctgttcaaacccctgttatacattgattttctctaaacaattcatgcaatcttctaatcgataacatctcgtttgcagGTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGGTCATGATCATGATATGGAGAACTCCACCAGTCCTGGTTGCCCTCTACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - caccttc
- - - - - - - - - gctgctg
- - - - - - - - - - - - - -caaaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaca