Sequence
atgc intronic sequence ATGC exonic sequence...ttttcagcatttgcttttcaatagaaacagttatagtatatagccatttagaagcatctgtatctgttcactgaatcttcttatttgcaaaatctgtcagGCATCACTAAAGATGTTGAAAGTGGAAGAGAAACTATCAAAAGGATGGGGAGGTGAAAATGCATATCATGTTGGGGGTTATCGTTACTTACTGGTGGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g06030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os08g33076.1 (Oryza sativa), 3'ss of exon 7
--------------------------------------------------------ttttcagcatttgcttttcaatagaaacag------ttatagtatatagcc---atttagaagcat-----ctgtatctgttcactgaatcttcttatttgcaaaatctgt--cagGCATCACTAAAGATGTTGAAAGTGGAAGAGAAACTATCAAAAGGATGGGGAGGTGAAAATGCATATCATGTTGGGGGTTATCGTTACTTACTGGTGGATG
| |||| | || ||| ||| | || | | | | | || || || |||| ||| || | || || ||| | | | | |||||||||| || || ||| |||| |||| ||||| |||||||||||| |||||||| ||||||||||| || ||||| |||||||| || |||
gtgagtggcccttgcataatttccacccttttcatgatttcttgatgcggtactgagctcaagcaggccatgttgaatgaaaataagaaatattctcatgtctggtgtggcttgcaaaatattgatactgtggttgtgaacacatgctcatttttttatatttatattgcagGCATCACAGAACATTGTGACTCTGGAGCTGAAATTATCACGAGGATGGGGAGGAGAAAATGCTTATCATGTTGGTGGATATCGCTACTTACTTGTTGATC
upper sequence: Vv01s0011g06030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G045944_T02 (Zea mays), 3'ss of exon 7
--ttttcagcatttgcttttcaatagaaacagttatagtatatagccatttagaagcatctgtatctgttcactgaatcttcttatttgcaaaatctgtcagGCATCACTAAAGATGTTGAAAGTGGAAGAGAAACTATCAAAAGGATGGGGAGGTGAAAATGCATATCATGTTGGGGGTTATCGTTACTTACTGGTGGATG
| | | |||| | | || | | | | | || ||| | | | ||| ||| | || | || || | | || || || |||||||||| ||||| | | || || ||||| | || |||||||||||| |||||||| ||||||||| | || |||||||| || || || |||
gttatggtgtattttgatatgaagaacatggctctgaatgcatgcccaataatttg-atcattattttttgatgaaacaatcatttgatcattat-tgccagGCATCACAGAAGATTGTCACTGTTGAGCAGAAATTGACACGAGGATGGGGAGGAGAAAATGCGTATCATGTTAGTGGATATCGTTATTTGCTTGTTGATC
upper sequence: Vv01s0011g06030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G05260.1 (Glycine max), 3'ss of exon 6
ttttcagcatttgcttttcaatagaaacagttatagtatatagccatttag-aagcatctgtatctgttcactgaatcttcttatttgcaaaatctgtcagGCATCACTAAAGATGTTGAAAGTGGAAGAGAAACTATCAAAAGGATGGGGAGGTGAAAATGCATATCATGTTGGGGGTTATCGTTACTTACTGGTGGATG
| | || || || | | || | | || ||||| || | | | | | | | | || || || | ||| |||||||||||| || || |||||||| |||||||||||||| ||||||||||| || || ||||||||||||||| | || || || |||||| | || ||||
-tcccttttactgaaattgggaagcatatgaaattgaactgagatgtttagcaaatgtatctttttctctgatcataattttttttggttgaatacatcagGCATCACTTAAAATATTGAAAGTTGAAGAGAAACTATCGAAAGGATGGGGTGGAGAGAATGCATATCATGTTAGTGGGTACCGCTACTTATTAGTAGATG
upper sequence: Vv01s0011g06030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G34400.1 (Glycine max), 3'ss of exon 6
-----ttttcagcatttgcttttcaatagaaacagttatagtatatagccatttagaagcatctgtatctgttcactgaatcttcttatttgcaaaatctgtcagGCATCACTAAAGATGTTGAAAGTGGAAGAGAAACTATCAAAAGGATGGGGAGGTGAAAATGCATATCATGTTGGGGGTTATCGTTACTTACTGGTGGATG
| ||||| || || || || | ||| || || | ||| | ||| || | || | | || | ||||| ||| |||||||||||| || || |||||||| |||||||||||||| ||||||||||| || || ||||| ||||| ||| | || || || |||||||| || ||||
tcagttgggaagcatatgaaattgaactgagatgtttagcaaatgtatctttttctctg-atcataatttttttatt----ttttatttttgctgaatgcatcagGCATCACTTAAAATATTGAAAGTTGAAGAGAAACTATCGAAAGGATGGGGTGGAGATAATGCTTATCACGTTAGTGGGTACCGCTACTTACTTGTAGATG
upper sequence: Vv01s0011g06030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G80910.1 (Arabidopsis thaliana), 3'ss of exon 7
ttttcagcatttgcttttcaatagaaacagttatagtatatagccatttagaagcatctgtatctgttcactgaatcttcttatttgcaaaatctgtcagGCATCACTAAAGATGTTGAAAGTGGAAGAGAAACTATCAAAAGGATGGGGAGGTGAAAATGCATATCATGTTGGGGGTTATCGTTACTTACTGGTGGATG
|| ||| || | |||| | | | || | | | |||| | || | | || | | | | | | |||||||| || || |||||||| |||||||| ||||| ||||| ||||| ||||| ||||| || ||||| | ||||| ||||||||||| || |||
--------gttagctcatctctgtaaacc-------tgtcttgcttcattgtaaaatcttttcagactccatcccttatcatctctatgcatttttgcagGCATCGACCAAAATCTTGAAAGTCGAAGAGAAGCTATCGAAAGGGTGGGGCGGTGAGAATGCTTACCATGTAAGCGGTTACCGTTACTTACTAGTTGATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161711565|gb|FC060782.1|FC060782EST: TGAATGGGGAGCAAGGGATTTCTGTGGTCAAGCAGCAAATTGTGGAAAAT GCATCACTAAAGATGTTGAAAGTTGAAGAGAAACTATCAAAAGGATGGGGA
genomic: TGAATGGGGAGCAAGGGATTTCTGTGGTCAAGCAGCAAATTGTGGAAAATgtcagtctcc ... aatctgtcagGCATCACTAAAGATGTTGAAAGTGGAAGAGAAACTATCAAAAGGATGGGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttagaagcatctgtatctgttcactgaatcttcttatttgcaaaatctgtcagGCATCACTAAAGATGTTGAAAGTGGAAGAGAAACTATCAAAAGGATGGGGAGGTGAAAATGCATATCATGTTGGGGGTTATCGTTACTTACTGGTGGATG
ttcttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttcagcatttgcttttcaatagaaacagttatagtatatagccatttagaagcatctgtatctgttcactgaatcttcttatttgcaaaatctgtcagGCATCACTAAAGATGTTGAAAGTGGAAGAGAAACTATCAAAAGGATGGGGAGGTGAAAATGCATATCATGTTGGGGGTTATCGTTACTTACTGGTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - -catttgc
- - - - - - - - - -aatagaa
- - - - - - - - - - - - - - - - - - - - - -ccattta
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgaa