Sequence
atgc intronic sequence ATGC exonic sequencegtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacagGGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G017525_T01 (Zea mays), 3'ss of exon 3
gtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacagGGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAA
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gtaagtg----aaatatatcttttcttctagttttaagctgctaccga--gttgctcgtggtagatttgtacaagttcttcagcggtgaattttattgatttgttgaatattgtc------tttttttgcagGGAGAAATGCAGCAACTCCGGGACAAACTTGCTATTGCAGAAAGGGCTGCAAGATCAGAAGCTCAACTGAAA
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G05100.1 (Glycine max), 3'ss of exon 7
gtaaatac--tctgaagttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaac--ctcttgttacagGGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAA
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gtggatatcatttctgattcctttggatttaatcttttgtgcctttttttttataaaaaaaagtatatatcttcttgcatttggtttccct--tcaatacggtttccatttttttaccaaactacacttttattagGGAGAGATGCAGCAACTTCGGGACAAGCTTGCTATAACTGAGCGAACTGCAAAGTCTGAAGCACAGTTAAAA
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G34560.1 (Glycine max), 3'ss of exon 7
gtaaatact--ctgaagttcttattgtttcaaaactt-gagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacagGGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAA
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gtgaatattatttctgattcctttggatttaaactttcgtggttttttttaaagtatatatcttcctgcatttggcttcccct--tcaatgtggttttcat--tttgt---ttttaccaaactacactcttatagGGAGAGATGCAACAACTTCGGGACAAGCTTGCTATAACTGAGCGCACTGCAAAGTCTGAAGCACAGTTAAAA
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G68060.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttctt---tttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttac---caaaacctcttgttacagGGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAA
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-----------------------gttt---actttga--tatgattgcccttttcctaaatttgtggaatccagattct--ttgaagtgacaaaggcacacaaccttacattctcactctttaactctcttcttgcagGGAGAAATGCAGCAACTCCGCGATAAGCTTGCCATATCAGATCGAGCTGCGAAATCTGAAGCACAGCTAAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719957|gb|FC067712.1|FC067712EST: ACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAA GGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCA
genomic: ACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactc ... cttgttacagGGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacagGGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAA
cctcttgtt CT-rich tract
tttgtaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacagGGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC