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gtaatgtcataaacctggatagtccatttcctccatttatagaaacatcttataatgtttattaacaaatgcagTCATTTTCCCACGCCACGTGGAAGGCAAAAAACTGGACCGAACTGTTTGGAGTTTATCAACATTTCGTGCATATGTTAGTTATCATGTTAAG
species | Vitis vinifera |
transcript | Vv01s0011g05400.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGATTCGTTACTTTTG TCATTTTCCCACGCCACGTGGAAGGCAAAAAACTGGACCGAACTGTTTGGAEST: gi|110361352|gb|EC924819.1|EC924819
genomic: AGGATTCGTTACTTTTGgtaatgtcat ... acaaatgcagTCATTTTCCCACGCCACGTGGAAGGCAAAAAACTGGACCGAACTGTTTGGA
EST: GGGTACTGCTGGTGAAGCTTTATCTGCAAATGCAGGATTCGTTACTTTTG TCATTTTCCCACGCCACGTGGAAGGCAAAAAACTGGACCGAACTGTTTGGAEST: gi|110362276|gb|EC925797.1|EC925797
genomic: GGGTACTGCTGGTGAAGCTTTATCTGCAAATGCAGGATTCGTTACTTTTGgtaatgtcat ... acaaatgcagTCATTTTCCCACGCCACGTGGAAGGCAAAAAACTGGACCGAACTGTTTGGA
EST: GGGTACTGCTGGTGAAGCTTTATCTGCAAATGCAGGATTCGTTACTTTTG TCATTTTCCCACGCCACGTGGAAGGCAAAAAACTGGACCGAACTGTTTGGA
genomic: GGGTACTGCTGGTGAAGCTTTATCTGCAAATGCAGGATTCGTTACTTTTGgtaatgtcat ... acaaatgcagTCATTTTCCCACGCCACGTGGAAGGCAAAAAACTGGACCGAACTGTTTGGA
tagtccatttcctccatttatagaaacatcttataatgtttattaacaaatgcagTCATTTTCCCACGCCACGTGGAAGGCAAAAAACTGGACCGAACTGTTTGGAGTTTATCAACATTTCGTGCATATGTTAGTTATCATGTTAAG
tattaac putative branch site (score: 1)
atttatagaaacatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtcataaacctggatagtccatttcctccatttatagaaacatcttataatgtttattaacaaatgcagTCATTTTCCCACGCCACGTGGAAGGCAAAAAACTGGACCGAACTGTTTGGAGTTTATCAACATTTCGTGCATATGTTAGTTATCATGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG