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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttggtgactaggcttgttttaccatataatagagtgaacttttagttcttacaagcaattctgttaatttttttcctctgtggttggttgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGTGCAGGCAGTGGTTAGAAAAGCACACCTTGGCATAGTGACAACAATGAGG

Basic information

species Vitis vinifera
transcript Vv01s0011g04970.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45771618|gb|CN007470.1|CN007470
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
EST: gi|26263024|gb|CA814087.1|CA814087
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTAATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
EST: gi|30328488|gb|CD011750.1|CD011750
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
EST: gi|110711442|gb|EE087923.1|EE087923
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAAGGAGA-ACTTGTGATTGTGAATTTCTGCAA-TATGCAG
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACA-TTGTGATTGTGAATT-CTGCAAGTATGCAG
EST: gi|110377427|gb|EC942492.1|EC942492
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTAATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
EST: gi|110360943|gb|EC924388.1|EC924388
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
EST: gi|71876936|gb|DT025991.1|DT025991
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
EST: gi|33402110|gb|CF207737.1|CF207737
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
EST: gi|110404868|gb|EC970393.1|EC970393
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAGGGAGACGTTGTGATTGTGAATTCTGCAAGTATGCAGGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
EST: gi|30322175|gb|CD005437.1|CD005437
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
EST: gi|352774046|gb|FQ474569.1|FQ474569
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
EST: gi|110711776|gb|EE088641.1|EE088641
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGT                         TGGGACAATCCANGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAAGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
EST: gi|110700562|gb|EE078742.1|EE078742
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
EST: gi|30328811|gb|CD012073.1|CD012073
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAGGGAGACATTGTGATTGTGAATTTTGCAAGTATGCAGGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
EST: gi|27579805|gb|CB002500.1|CB002500
EST:     GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGT                         TGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT
genomic: GACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTgtataagttt ... tgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcttacaagcaattctgttaatttttttcctctgtggttggttgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGTGCAGGCAGTGGTTAGAAAAGCACACCTTGGCATAGTGACAACAATGAGG
             aattctgttaattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttggtgactaggcttgttttaccatataatagagtgaacttttagttcttacaagcaattctgttaatttttttcctctgtggttggttgacatgcagTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGTGCAGGCAGTGGTTAGAAAAGCACACCTTGGCATAGTGACAACAATGAGG

- -tggtgac
- - - - - - ggcttgt
- - - - - - - - - - - -ccatata
- - - - - - - - - - - - - - - - - - - - - - - - - - acaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgg