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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatgtggacttgatgttctgtttttccttgagaagaggaaatgtgatttcttaccatgatacatgtttgattccagATTTTCTGCTTATTGTCCTGAAGGATCTCCTTCCTCGCCGGCCAGAACTGAGGTTGATTTTGATGAGTGCAACCTTAGATGCAGAACTTTTCTCATCCTA

Basic information

species Vitis vinifera
transcript Vv01s0011g04360.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 3'ss of exon 1
-------------gtaaaatgtg-gacttgatgttct----gtttttccttgagaagaggaaatgtgatttcttacc-atgatacatg---tttgattccagATTTTCTGCTTATTGTCCTGAAGGATCTCCTTCCTCGCCGGCCAGAACTGAGGTTGATTTTGATGAGTGCAACCTTAGATGCAGAACTTTTCTCATCCTA
              ||||||     | |     |||     ||| |  || || |    |  |   |||||| | |  |  ||   ||   |||  | | ||||||||| ||||||||||||||||| || ||||| |||||||| || || ||  |  ||||||||||||||||| |  | || ||  | ||||| || ||
gtctgcaatcgtcataaaataaataaatctgcattcaaaaagttatagctagacactcaggtagacgatttcatgctgaatatttttgtatttttgtgctagATTTTCTTCTTATTGTCCTGAAGGACCTTCTTCCACGCCGGCCTGAGCTAAGACTTGTTTTGATGAGTGCAACCCTTAACGCTGAGTTATTCTCTTCATA

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G373175_T02 (Zea mays), 3'ss of exon 7
----gtaaaatgtggacttgatgttctgtttttccttgagaaga--ggaaatgtgat--ttcttac-----catgata--catgtttg-------attccagATTTTCTGCTTATTGTCCTGAAGGATCTCCTTCCTCGCCGGCCAGAACTGAGGTTGATTTTGATGAGTGCAACCTTAGATGCAGAACTTTTCTCATCCTA
    | |  |     |||| || |||  ||  | ||  | | |    | |||||  |  || ||        ||| ||  | | ||||        | | ||||||||| ||||||||| | |||||||| ||||| || || || || |||||| | || ||||||||||||||| |  |||| || || ||||| || ||
gtctgcattagtcatactt-attttcatttagtactaaaaatgtttagcaatgtactcatttttgtaaatttatgctaatcttttttgtgtctttgtgctagATTTTCTTCTTATTGTCTTAAAGGATCTTCTTCCACGTCGCCCTGAGCTGAGGCTTATATTGATGAGTGCAACCCTTAATGCTGAGCTATTCTCTTCATA

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 10
gtaaaatgt-ggacttgatgttctgtttttccttgagaagaggaaatgtgatttcttaccatgatacatgtttgattccagATTTTCTGCTTATTGTCCTGAAGGATCTCCTTCCTCGCCGGCCAGAACTGAGGTTGATTTTGATGAGTGCAACCTTAGATGCAGAACTTTTCTCATCCTA
||| ||| | |  ||| ||    |  ||||| || |||| |     | | | |  | |   |  | ||| |||  |  ||||||||||||||||| |||| || || || ||||| |  || ||||||||||   |||||||||||||||| ||| ||||||| || || ||||| || ||
gtagaattttgagcttcattgaatcattttcttttagaacatt---tctaaatattcatattcttgcattttttgtgacagATTTTCTGCTTATTATCCTTAAAGAACTTCTTCCACATCGACCAGAACTGAAACTGATTTTGATGAGTGCTACCCTAGATGCTGAGCTCTTCTCTTCATA

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G01130.1 (Arabidopsis thaliana), 3'ss of exon 7
----gtaaaatgtggacttgatgtt-ctgtttttccttgagaagaggaaatgt-gatttcttaccatgatacatgtttgattccagATTTTCTGCTTATTGTCCTGAAGGATCTCCTTCCTCGCCGGCCAGAACTGAGGTTGATTTTGATGAGTGCAACCTTAGATGCAGAACTTTTCTCATCCTA
    ||| | | | |   | | |   ||  |  |  ||      |    || | | | |||||| ||  ||| | | | |||  |||||| || |||||  | || |||||||| ||  |||| ||  |||| || | | ||||||||||||||||||| |||||||| || |||||||| || ||
gtatgtatacttttgctatcaagcagctcctcatttttagcttaacttgatttaggtgtcttactatattacttttgt-attttagATTTCCTTCTTATCATTCTTAAGGATCTGCTATCTCGTCGCTCAGAGCTTAAGCTGATTTTGATGAGTGCAACTTTAGATGCGGAGCTTTTCTCGTCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttccttgagaagaggaaatgtgatttcttaccatgatacatgtttgattccagATTTTCTGCTTATTGTCCTGAAGGATCTCCTTCCTCGCCGGCCAGAACTGAGGTTGATTTTGATGAGTGCAACCTTAGATGCAGAACTTTTCTCATCCTA
                        atttctta  TA-rich tract