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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtttctccagaagaaagaattattgcatgcttattacctcagttatgcatacattcatttttcttttcttttctcatttggacaaagaattactatttttagaggtattgcagGTTTCATCGCCATTGCTGATTCTTCATGGAGCTGCAGATAAGGTGACGGATCCACTAGTGAGCCAGTTCCTTTATGAGAAGGCTTCTAGTAAAGATAAAA

Basic information

species Vitis vinifera
transcript Vv01s0011g03620.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g03620.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G25020.2 (Glycine max), 3'ss of exon 6
gtcagtttctccagaagaaagaattattgcatgcttattacctcagttatgcatacattcatttttcttttcttttctcat-ttggacaaagaattactatttttagaggtattgcagGTTTCATCGCCATTGCTGATTCTTCATGGAGCTGCAGATAAGGTGACGGATCCACTAGTGAGCCAGTTCCTTTATGAGAAGGCTTCTAGTAAAGATAAAA
|| ||||| | |  |     |  ||     |  || |     | |    ||| |  |||   | | |||||    |   || || | || |  |     |    |   |||  ||||||||||  | |||||  ||||||| |||||||| |||||| ||||||| |||||| |||||||||| || ||||||||||| ||||||||||||||||| |
gttagtttttgctcacttctgttttccgagaatctaacg--tttatacctgctttgattatctgtgctttttgcatgcaatctttgtcatatcaactggaaacatgagggtgatgcagGTTTCTGCTCCATTATTGATTCTCCATGGAGCAGCAGATCAGGTGACAGATCCATTAGTGAGCCAATTTCTTTATGAGAAAGCTTCTAGTAAAGATAAGA

upper sequence: Vv01s0011g03620.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G19820.1 (Glycine max), 3'ss of exon 7
------------------------------------------------gtcagtttctccagaagaaagaattattgcatgcttattacctcagttatgcatacattcat-ttttcttttcttttctcatttgga--caaagaattactatttttaga--------ggtattgcagGTTTCATCGCCATTGCTGATTCTTCATGGAGCTGCAGATAAGGTGACGGATCCACTAGTGAGCCAGTTCCTTTATGAGAAGGCTTCTAGTAAAGATAAAA
                                                ||    ||||       | ||||||          |  | |    |||||   |   || |  ||| |  |  || || |||    |  ||   ||||  | | | | ||        |  ||||||||| ||| |||||||  |||||||||||||||| | |||||||||||| |||||| |||||||| | || ||||||||||  || ||||| |||||||| |
gttagttatttctttacctctcttctcattttcccctcctttctttttgttgtcttctttttcttacagaatttaaatcgaaattatgctatggttatttctctttttacatttgcagtaattgtcacataaaaaaacattaaattgttctctattgattgagtgtgtgattgcagGTCTCAGCGCCATTATTGATTCTTCATGGAGCAGAAGATAAGGTGACTGATCCATTAGTGAGCAAATTTCTTTATGAGAGAGCATCTAGCAAAGATAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110689348|gb|EE065495.1|EE065495
EST:     CTGTGGAGCTGTTAGAGGCCACAAGTGATATTGAGATGCAATTGGAGAAG                         GTTTCATCGCCATTGCTGATTCTTCATGGAGCTGCAGATAAGGTGACGGAT
genomic: CTGTGGAGCTGTTAGAGGCCACAAGTGATATTGAGATGCAATTGGAGAAGgtcagtttct ... ggtattgcagGTTTCATCGCCATTGCTGATTCTTCATGGAGCTGCAGATAAGGTGACGGAT
EST: gi|110389307|gb|EC954133.1|EC954133
EST:     CTGTGGAGCTGTTAGAGGCCACAAGTGATATTGAGATGCAATTGGAGAAG                         GTTTCATCGCCATTGCTGATTCTTCATGGAGCTGCAGATAAGGTGACGGAT
genomic: CTGTGGAGCTGTTAGAGGCCACAAGTGATATTGAGATGCAATTGGAGAAGgtcagtttct ... ggtattgcagGTTTCATCGCCATTGCTGATTCTTCATGGAGCTGCAGATAAGGTGACGGAT
EST: gi|110403438|gb|EC968956.1|EC968956
EST:     CTGTGGAGCTGTTAGAGGCCACAAGTGATATTGAGATGCAATTGGAGAAG                         GTTTCATCGCCATTGCTGATTCTTCATGGAGCTGCAGATAAGGTGACGGAT
genomic: CTGTGGAGCTGTTAGAGGCCACAAGTGATATTGAGATGCAATTGGAGAAGgtcagtttct ... ggtattgcagGTTTCATCGCCATTGCTGATTCTTCATGGAGCTGCAGATAAGGTGACGGAT
EST: gi|45771154|gb|CN007006.1|CN007006
EST:     CTGTGGAGCTGTTAGAGGCCACAAGTGATATTGAGATGCAATTGGAGAAG                         GTTTCATCGCCATTGCTGATTCTTCATGGAGCTGCAGATAAGGTGACGGAT
genomic: CTGTGGAGCTGTTAGAGGCCACAAGTGATATTGAGATGCAATTGGAGAAGgtcagtttct ... ggtattgcagGTTTCATCGCCATTGCTGATTCTTCATGGAGCTGCAGATAAGGTGACGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttttcttttctcatttggacaaagaattactatttttagaggtattgcagGTTTCATCGCCATTGCTGATTCTTCATGGAGCTGCAGATAAGGTGACGGATCCACTAGTGAGCCAGTTCCTTTATGAGAAGGCTTCTAGTAAAGATAAAA
                         aaagaattactatttt  TA-rich tract