Sequence
atgc intronic sequence ATGC exonic sequence...aatgttgttatagacagattatttctcatgaatatttgccattggcctgctgaagagttctgttctgttatctgctctaaactttctccactatttgcagGTATAAAGCTGGTCTGGAAGAGTTGGTCATATTAAAGAAATTAGTAGGTGCAGATCCAGATGACAAGCGTCATTGTGTTCGTTTTCTCTCTAGTTTCAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G24820.1 (Glycine max), 3'ss of exon 9
---aatgttgttatagacagattatttctcatgaa--tatttgccattggcctgctgaagagttctgttctgttatctgctctaaactttctccactatt-tgcagGTATAAAGCTGGTCTGGAAGAGTTGGTCATATTAAAGAAATTAGTAGGTGCAGATCCAGATGACAAGCGTCATTGTGTTCGTTTTCTCTCTAGTTTCAAA
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gtgagtgatgtttctttcttgggaatcctcagtaaacttttttccttttgggtagtgtttattttt-ctcactgatatacatatatatatgtctaatatggcatagGTACAAGGCTGGTATGGATGAATTGGTCATATTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAGA
upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G42220.1 (Glycine max), 3'ss of exon 12
---aatgttgttatagacagattatttctcatgaatatttgccattggcctgctgaagagttctgttctgttatctgctctaaactttctccactatt-tgcagGTATAAAGCTGGTCTGGAAGAGTTGGTCATATTAAAGAAATTAGTAGGTGCAGATCCAGATGACAAGCGTCATTGTGTTCGTTTTCTCTCTAGTTTCAAA
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gtgagtgatgtttctttcttgggaatcctcagtaaactttt---ttgcttttgggtagtgttttatttttttgctcactgttatatatgtttaatgtggcatagGTACAAGGCTGGTATGGATGAATTGGTCATATTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAGA
upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G20810.2 (Glycine max), 3'ss of exon 9
---aatgttgtta--tagacagattatttctcatgaatatttgccattggcctgctgaagagttctgttctgttatctgctctaaactttctccactatttgcagGTATAAAGCTGGTCTGGAAGAGTTGGTCATATTAAAGAAATTAGTAGGTGCAGATCCAGATGACAAGCGTCATTGTGTTCGTTTTCTCTCTAGTTTCAAA
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gtgagtggccttggtttgtgtgatattctcattaaaatttctgcttttagcatgcg-------tcccttatactcactattatattttgtatgtcattgtcatagGTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTGCTGATCCGGATGATAAGTGTCATTGTGTTCGTTTCCTTTCAAGTTTTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctgctgaagagttctgttctgttatctgctctaaactttctccactatttgcagGTATAAAGCTGGTCTGGAAGAGTTGGTCATATTAAAGAAATTAGTAGGTGCAGATCCAGATGACAAGCGTCATTGTGTTCGTTTTCTCTCTAGTTTCAAA
ctctaaa putative branch site (score: 3)
ctttctccactattt CT-rich tract
taaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatgttgttatagacagattatttctcatgaatatttgccattggcctgctgaagagttctgttctgttatctgctctaaactttctccactatttgcagGTATAAAGCTGGTCTGGAAGAGTTGGTCATATTAAAGAAATTAGTAGGTGCAGATCCAGATGACAAGCGTCATTGTGTTCGTTTTCTCTCTAGTTTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - -agacaga
- - - - - - - - - - - - ctcatga
- - - - - - - - - - - - - - - - - -ttgccat
- - - - - - - - - - - - - - - - - - - - - - -cctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgctc