1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaaataccctttaactggcttctgtctccaaggttcatatttttttttccttgaacgtttctcgttgttcatggttgcagACTTTCGGTGATTTTCCTAGACATCGGGGTGGTCGAGGTGGGCGTGGGCCCAATCGTGGAGGGCGTGGTCGGGGTCCTTATTATGGAAGGGGTTATGGCT
species | Vitis vinifera |
transcript | Vv01s0011g02820.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACATAATGGAAGGACTANGTTCTCCGAACAAATGAAGATTGATACTGAG ACTTTCGGTGATTTTCCTAGACATCGGGGTGGTCAAGGTGGGCGTGGGCCCEST: gi|161714152|gb|FC064417.1|FC064417
genomic: CACATAATGGAAGGACTAGGTTCTCCGAACAAATGAAGATTGATACTGAGgtaaaatacc ... atggttgcagACTTTCGGTGATTTTCCTAGACATCGGGGTGGTCGAGGTGGGCGTGGGCCC
EST: CACATAATGGAAGGACTAGGTTCTCCGAACAAATGAAGATTGATACTGAG ACTTTCGGTGATTTTCCTAGACATCGGGGTGGTCGAGGTGGGCGTGGGCCCEST: gi|110690673|gb|EE068036.1|EE068036
genomic: CACATAATGGAAGGACTAGGTTCTCCGAACAAATGAAGATTGATACTGAGgtaaaatacc ... atggttgcagACTTTCGGTGATTTTCCTAGACATCGGGGTGGTCGAGGTGGGCGTGGGCCC
EST: CACATAATGGAAGGACTAGGTTGTCCGAACAAATGAAGATTGATACTGAG ACTTTCGGTGATTTTCCTANACATCGGGGTGGTCGAGGTGGGCGTGGGCCC
genomic: CACATAATGGAAGGACTAGGTTCTCCGAACAAATGAAGATTGATACTGAGgtaaaatacc ... atggttgcagACTTTCGGTGATTTTCCTAGACATCGGGGTGGTCGAGGTGGGCGTGGGCCC
ctccaaggttcatatttttttttccttgaacgtttctcgttgttcatggttgcagACTTTCGGTGATTTTCCTAGACATCGGGGTGGTCGAGGTGGGCGTGGGCCCAATCGTGGAGGGCGTGGTCGGGGTCCTTATTATGGAAGGGGTTATGGCT
ttcatattttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaataccctttaactggcttctgtctccaaggttcatatttttttttccttgaacgtttctcgttgttcatggttgcagACTTTCGGTGATTTTCCTAGACATCGGGGTGGTCGAGGTGGGCGTGGGCCCAATCGTGGAGGGCGTGGTCGGGGTCCTTATTATGGAAGGGGTTATGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG