1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatcaagttcttacactgttgaggtgaacctttttgctcgatacttccatgataacattagtatatctaggtggtgagtgtttccttttccatgcttcacagGTTGTTAGAGCTTTTGATAGTATGGGTACCTCGGATCTGTCCAATGGAATGAGGGTGGGTGAAAGTGAAGTATTTAATTCTGCACAACAATCTGAAGAAA
species | Vitis vinifera |
transcript | Vv01s0011g02460.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGCAGCTTGTGTCCGTCATTCAGCTGCAAAGAGACCACGAATGGGACAG GTTGTTAGAGCTTTTGATAGTATGGGTACCTCGGATCTGTCCAATGGAATGEST: gi|110412009|gb|EC977741.1|EC977741
genomic: CTGCAGCTTGTGTCCGTCATTCAGCTGCAAAGAGACCACGAATGGGACAGgtaatcaagt ... tgcttcacagGTTGTTAGAGCTTTTGATAGTATGGGTACCTCGGATCTGTCCAATGGAATG
EST: CAGCTGCAAAGAGACCACGAATGGGACAG GTTGTTAGAGCTTTTGATAGTATGGGTACCTCGGATCTGTCCAATGGAATGEST: gi|30305137|gb|CB981931.1|CB981931
genomic: CAGCTGCAAAGAGACCACGAATGGGACAGgtaatcaagt ... tgcttcacagGTTGTTAGAGCTTTTGATAGTATGGGTACCTCGGATCTGTCCAATGGAATG
EST: CTGCAGCTTGTGTCCGTCATTCAGCTGCAAAGAGACCACGAATGGGACAG GTTGTTAGAGCTTTTGATAGTATGGGTACCTCGGATCTGTCCAATGGAATG
genomic: CTGCAGCTTGTGTCCGTCATTCAGCTGCAAAGAGACCACGAATGGGACAGgtaatcaagt ... tgcttcacagGTTGTTAGAGCTTTTGATAGTATGGGTACCTCGGATCTGTCCAATGGAATG
catgataacattagtatatctaggtggtgagtgtttccttttccatgcttcacagGTTGTTAGAGCTTTTGATAGTATGGGTACCTCGGATCTGTCCAATGGAATGAGGGTGGGTGAAAGTGAAGTATTTAATTCTGCACAACAATCTGAAGAAA
tgataac putative branch site (score: 2)
tttccttttccatgct putative PPT
taacattagtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcaagttcttacactgttgaggtgaacctttttgctcgatacttccatgataacattagtatatctaggtggtgagtgtttccttttccatgcttcacagGTTGTTAGAGCTTTTGATAGTATGGGTACCTCGGATCTGTCCAATGGAATGAGGGTGGGTGAAAGTGAAGTATTTAATTCTGCACAACAATCTGAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA