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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttttttccttttatcttgtaacttttttaccaaaataaaaagggaaaggaaaaaaacccttacgatcttattagtttaaaagaatttgtgcaacaaagttctaatttctcagcagtgttgaaatgcagAACCTTCAACCACCTAGTTACTACCCCACTTGAGGCTGCTGCCTGTTGCTCTCCTTCTGTTTGAGTAGAAAAATGTATTATTTACAAACTACATCCCTAC

Basic information

species Vitis vinifera
transcript Vv01s0011g02070.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415762|gb|EC981694.1|EC981694
EST:     GAATTCTTGAAGGAGTTTTATGAAGAGTGGGATGGAAGAGCTTGAATAAG                         AACCTTCAACCACCTAGTTACTACCCCACTTGAGGCTGCTGCCTGTTGCTC
genomic: GAATTCTTGAAGGAGTTTTATGAAGAGTGGGATGGAAGAGCTTGAATAAGgtaatttttt ... tgaaatgcagAACCTTCAACCACCTAGTTACTACCCCACTTGAGGCTGCTGCCTGTTGCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttaaaagaatttgtgcaacaaagttctaatttctcagcagtgttgaaatgcagAACCTTCAACCACCTAGTTACTACCCCACTTGAGGCTGCTGCCTGTTGCTCTCCTTCTGTTTGAGTAGAAAAATGTATTATTTACAAACTACATCCCTAC
                         ttctaat  putative branch site (score: 2)
     aaagaattt  TA-rich tract