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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcaacattatatttaattgaagcacatatcaactgaatgctttcattttcatggctggctattgttacacattctctgattttgcttgcaactggaataaagattgtctggatgatgatttttaatgttttattgtgattaacatggtaagagtgactgattgaaatgtcccttgtctttgttttagGTAGAGCAATCTCTTCTAGTGACTGGGTTTGGTTATGAGCATGATGACGCATGGGCTACCAACATAGATTTGTTTAAAGAGTTTACTGATGTCAGCAGG

Basic information

species Vitis vinifera
transcript Vv01s0011g01800.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01800.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os02g07350.1 (Oryza sativa), 3'ss of exon 6
gtgagtcaacattatatttaattgaagcacatatcaactgaatgctttcattttcatggctggctattgttacacattctctgattttgcttgcaactggaataaagattgtctggatgatgatttttaatgttttattgtgattaacatggtaagagtgactgattgaaatgtcccttgtctttgttttagGTAGAGCAATCTCTTCTAGTGACTGGGTTTGGTTATGAGCATGATGACGCATGGGCTACCAACATAGATTTGTTTAAAGAGTTTACTGATGTCAGCAGG
                                                                                          |    | || | |     | |     |  |   || ||    ||| ||| || | |  ||  |  || |||   |    | |||| ||  |   |  | ||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |||||||  ||||||||| ||||||| || || |  || ||  | ||||||
------------------------------------------------------------------------------------------tattgattgtagtggttctggatgcaaccagagttcttgtgatttaattttg-tcagaatattt-gactgaagaaagatattgtctctaattgattctctagGTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCATGGGTGACCAACATAAATTTGTTCAAGGAATACACAGACATTAGCAGG

upper sequence: Vv01s0011g01800.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G25880.1 (Glycine max), 3'ss of exon 6
gtgagtcaacattatatttaattgaagcacatatcaactgaatgctttcattttcatggctggctattgttacacattctctgattttgcttgcaactggaataaagattgtctggatgatgatttttaatgttttattgtgattaac-atggtaagagtgactgattgaaatgtcccttgtctttgttttagGTAGAGCAATCTCTTCTAGTGACTGGGTTTGGTTATGAGCATGATGACGCATGGGCTACCAACATAGATTTGTTTAAAGAGTTTACTGATGTCAGCAGG
                                                                                            ||| |        | |   |||| ||  |||  |   || || | | ||| || |  || ||   |   |    || | | ||    |  ||||||||||||| || | ||||||||||||||| || ||||| ||||| |||||||| ||||||||||| |||||||| || || ||||| ||||| ||||||||||||
--------------------------------------------------------------------------------------------gcagcattttatgaaacaatctgaattctgaaatactat-ttatctagtgcttcatgattgttgtatgtatgttttaataagtaatcttcctttgttttagGTGGAACGATCTCTTCTAGTGACAGGCTTTGGGTATGATCATGATGATGCATGGGCTACGAACATAGACTTATTCAAAGAATTTACGGATGTCAGCAGG

upper sequence: Vv01s0011g01800.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G31190.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgagtcaacattatatttaattgaagcacatatcaactgaatgctttcattttcatggctggctattgttacacattctctgattttgcttgcaactggaataaagattgtctggatgatgatttttaatgttttattgtgattaacatggtaagagtgactgattgaa-atgtcccttgtctttgttttagGTAGAGCAATCTCTTCTAGTGACTGGGTTTGGTTATGAGCATGATGACGCATGGGCTACCAACATAGATTTGTTTAAAGAGTTTACTGATGTCAGCAGG-
                                                                                                   | |   |  || ||  ||     ||||| |  ||||     || |        |     ||  | |||  | || |     |  ||   |  |||| |||  | | |||||  | || |||||||||||||| |||||||| ||||||   || ||||| ||  |||| ||||||||||||||||| ||  || 
---------------------------------------------------------------------------------------------------gtaagtaacttatcaagaatccaattttaa--gtttcgacatggtgtgttcaatggttttggtttattagatatttattcgggtttgaatgaagGTGGAGAGAGCACTTCTTATCACAGGGTTTGGTTATGAACATGATGATGCATGGAGCACTAACATGGAACTGTTCAAAGAGTTTACTGATGTGAGTCGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgattaacatggtaagagtgactgattgaaatgtcccttgtctttgttttagGTAGAGCAATCTCTTCTAGTGACTGGGTTTGGTTATGAGCATGATGACGCATGGGCTACCAACATAGATTTGTTTAAAGAGTTTACTGATGTCAGCAGG
                                    tcccttgtctttgttt  CT-rich tract
                                             tttgtttta  TA-rich tract