Sequence
atgc intronic sequence ATGC exonic sequence...ttcatttgaaattttgtcgcaagatctaattgaaatgatgttattgttcttacattatggggaatcaattcatttcaatgatctaggaatttatgcacagGTGTGAACCCTTCCCTACATACCCTCGAACATATGACATGCTTCATGCAAATGGGCTTCTCTCTCACCTCACTTCAGAGGGGTGCAACATAATGAATTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g00780.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G12900.1 (Glycine max), 3'ss of exon 7
ttcatttgaaattttgtcgcaagatctaattgaaatgatgttattgttcttacattatggggaatcaattcatttcaatgatctaggaatttatgcacagGTGTGAACCCTTCCCTACATACCCTCGAACATATGACATGCTTCATGCAAATGGGCTTCTCTCTCACCTCACTTCAGAGGGGTGCAACATAATGAATTTA
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gtaagttgctttttattctt--ggtctaggcaa---gttgtggaaactcttgtgaaataagtggttgatatat----gtgatctggtgattgatctttagGTGTGAACCTTTCCCCACATACCCTCGGACATATGATATGCTTCATGCAAATGGACTTCTTTCTCATCTCACTTCAGAGAGGTGCAGCTTGGTGAACTTA
upper sequence: Vv01s0011g00780.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G07020.1 (Glycine max), 3'ss of exon 6
ttcatttgaaattttgtcgcaagatctaattgaaatgatgttattgttcttacattatggggaatcaattcatttcaatgatctaggaatttatgcacagGTGTGAACCCTTCCCTACATACCCTCGAACATATGACATGCTTCATGCAAATGGGCTTCTCTCTCACCTCACTTCAGAGGGGTGCAACATAATGAATTTA
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gtaagttgcc-ttttgtt-cttggtctaggcaagttgtggaaactcttgtgaaat-------aaatggttcatatatgtgatctggggattgatctttagGTGTGAACCTTTCCCTACGTACCCCCGGACATATGATATGCTTCATGCAAATGGAATTCTTTCTCATCTCACTTCAGAGAGGTGCAGCTTGATGAACTTA
upper sequence: Vv01s0011g00780.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G35260.1 (Glycine max), 3'ss of exon 6
ttcatttgaaattttgtcgcaagatctaattgaaatgatgttattgttcttacattatggggaatcaattcatttcaatgatctagga-atttatgcacagGTGTGAACCCTTCCCTACATACCCTCGAACATATGACATGCTTCATGCAAATGGGCTTCTCTCTCACCTCACTTCAGAGGGGTGCAACATAATGAATTTA
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ttctaaagaacatcatctacctgttcggagttcactc-tgttaatgcatatgagcttcagataattcttttttgtatctgacaactgatatcaatcttcagGTGTGAACCTTTCCCCACCTACCCCAGAACATATGATATGCTTCATGCATATGGACTTATCTCACATCTCTCCTCAGAGAGGTGCAGCATGGTAGACTTA
upper sequence: Vv01s0011g00780.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G03140.1 (Glycine max), 3'ss of exon 6
ttcatttgaaattttgtcgcaaga-tctaattgaaatgatgttattgt-tcttacattatggggaatcaattcatttcaatgatctagga-atttatgcacagGTGTGAACCCTTCCCTACATACCCTCGAACATATGACATGCTTCATGCAAATGGGCTTCTCTCTCACCTCACTTCAGAGGGGTGCAACATAATGAATTTA
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---ctttggaattcattgacaaacctctttgtaaaatagtgttaatgtatttgagcttctggatatttcatgtttgtatctgacaactgatattgatcttcagGTGTGAACCTTTCCCTACCTACCCCAGAACATATGATATGCTTCATGCATACGGACTTATCTCACATCTCTCCTCGGAGAGGTGTAGTATGGTAGACTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttcttacattatggggaatcaattcatttcaatgatctaggaatttatgcacagGTGTGAACCCTTCCCTACATACCCTCGAACATATGACATGCTTCATGCAAATGGGCTTCTCTCTCACCTCACTTCAGAGGGGTGCAACATAATGAATTTA
ttcttac putative branch site (score: 2)
aattcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcatttgaaattttgtcgcaagatctaattgaaatgatgttattgttcttacattatggggaatcaattcatttcaatgatctaggaatttatgcacagGTGTGAACCCTTCCCTACATACCCTCGAACATATGACATGCTTCATGCAAATGGGCTTCTCTCTCACCTCACTTCAGAGGGGTGCAACATAATGAATTTA
- - - - - - - - - - - - - -aattgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatcaa