1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcacataaactacacacaaacacaagggaatggcctcatcactcaagaagaagtcttttttgtgctgaaaatggactaattcatgtgttttttttaacagACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTCCTGTTTTGCATCCCACCGGCAGTACTG
species | Vitis vinifera |
transcript | Vv01s0011g00600.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTCAAATATTGCATTTACCTACAGAAGTATATATTCAAAGAAAGCAGTG ACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTCEST: gi|71884544|gb|DT033599.1|DT033599
genomic: TTTCAAATATTGCATTTACCTACAGAAGTATATATTCAAAGAAAGCAATGgtaagatctt ... tttttaacagACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTC
EST: TTTCAAATATTGCATTTACCTACAGAAGTATATATTCAAAGAAAGCAATG ACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTCEST: gi|110365764|gb|EC929197.1|EC929197
genomic: TTTCAAATATTGCATTTACCTACAGAAGTATATATTCAAAGAAAGCAATGgtaagatctt ... tttttaacagACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTC
EST: TTTCAAATATTGCATTTACCTACAGAAGTATATATTCAAAGAAAGCAATG ACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTCEST: gi|351034668|gb|FQ458025.1|FQ458025
genomic: TTTCAAATATTGCATTTACCTACAGAAGTATATATTCAAAGAAAGCAATGgtaagatctt ... tttttaacagACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTC
EST: TTTCAAATATTGCATTTACCTACAGAAGTATATATTCNNNNNNNGCAATG ACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTCEST: gi|56409591|gb|CX017843.1|CX017843
genomic: TTTCAAATATTGCATTTACCTACAGAAGTATATATTCAAAGAAAGCAATGgtaagatctt ... tttttaacagACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTC
EST: TTTCAAATATTGCATTTACCTACAGAAGTATATATTCAAAGAAAGCAATG ACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTCEST: gi|22012480|gb|BQ797514.1|BQ797514
genomic: TTTCAAATATTGCATTTACCTACAGAAGTATATATTCAAAGAAAGCAATGgtaagatctt ... tttttaacagACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTC
EST: -TTCAAATA-TGCA-TTACCTACAGAAGTATATATTCAAAGAAAGCAATG ACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTC
genomic: TTTCAAATATTGCATTTACCTACAGAAGTATATATTCAAAGAAAGCAATGgtaagatctt ... tttttaacagACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTC
agaagaagtcttttttgtgctgaaaatggactaattcatgtgttttttttaacagACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTCCTGTTTTGCATCCCACCGGCAGTACTG
gactaat putative branch site (score: 2)
tgtttttttt putative PPT
taattcatgtgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacataaactacacacaaacacaagggaatggcctcatcactcaagaagaagtcttttttgtgctgaaaatggactaattcatgtgttttttttaacagACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTCCTGTTTTGCATCCCACCGGCAGTACTG
- -cataaac
- - - - - -acacaca
- - - - - - - - - -acacaag
- - - - - - - - - - - - - - - - -cctcatc
- - - - - - - - - - - - - - - - - - - - - - -agaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgt